Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0421
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    28   3.9  

>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
           protein ZK250.9 protein.
          Length = 1466

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 271 TMEQTCYNMMRKQXQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 417
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
           protein Y16E11A.2 protein.
          Length = 1466

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 271 TMEQTCYNMMRKQXQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 417
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
           protein F59H6.5 protein.
          Length = 1486

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 271 TMEQTCYNMMRKQXQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 417
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 298 MRKQXQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 402
           + KQ   E+ AS  YL+M  YF  D V  P  A +
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKF 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,859,878
Number of Sequences: 27780
Number of extensions: 153323
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)