Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0416
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 117 2e-27
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 49 7e-07
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 37 0.003
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 36 0.007
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 28 1.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 1.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.6
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 117 bits (281), Expect = 2e-27
Identities = 60/90 (66%), Positives = 67/90 (74%)
Frame = +2
Query: 8 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
VRTIAMDGTEGLVRG V+D+GSPI IPVG TLGRI+NVIGEP+DER PI K + IH
Sbjct: 105 VRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIH 164
Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLLMP 277
A+AP F + S EIL TGIKV LL P
Sbjct: 165 ADAPSFEEQSTTPEILETGIKVV--DLLAP 192
Score = 109 bits (262), Expect = 4e-25
Identities = 62/121 (51%), Positives = 69/121 (57%)
Frame = +1
Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
DLLAPYA TV I ELINN+AKAHGGYSVF GVGERTREGNDLY EM
Sbjct: 188 DLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYREM 247
Query: 436 IESGVISLKDKTSKVALVYGQMNEXXXXXXXXXXXXXXXXNISVIKKDRMYCFFIDNIFP 615
E+GVI L+ + SK ALV+GQMNE + + FIDNIF
Sbjct: 248 QETGVIKLEGE-SKAALVFGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFIDNIFR 306
Query: 616 F 618
F
Sbjct: 307 F 307
Score = 85.4 bits (202), Expect = 7e-18
Identities = 46/59 (77%), Positives = 48/59 (81%)
Frame = +3
Query: 510 PGARARVALTGLTVAEYFRDQEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVGYQP 686
PGARARVALTGLTVAEYFRD EGQDVLL F + + SEVSALLGRIPSAVGYQP
Sbjct: 272 PGARARVALTGLTVAEYFRDIEGQDVLLFIDNIFRFT-QAGSEVSALLGRIPSAVGYQP 329
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 48.8 bits (111), Expect = 7e-07
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 29 GTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPEF 205
G + LVR G+ V + + +PVG LGR+++ +G PID + PI T + + +AP
Sbjct: 105 GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGI 164
Query: 206 VDMSVQQEILVTGIKVAICSLL 271
+ + E + TG+K AI S++
Sbjct: 165 LPRTSVCEPMQTGLK-AIDSMV 185
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 HEVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTA 178
H+ +GT G+ VR + +G +RIPV + LGR+ N G PID+ + +
Sbjct: 69 HKAIVQVFEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYL 128
Query: 179 AIHAEAPEFVDMSVQQEILVTGI 247
I+ +E++ TGI
Sbjct: 129 DINGSPINPYARIYPEEMIQTGI 151
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 516 ARARVALTGLTVAEYFRDQEGQDVLLL--H*QHFSVSLRLDSEVSALLGRIPSAVGYQPY 689
AR TG+T+AEY+RDQ G++V ++ ++ +LR E+S L +P+ GY Y
Sbjct: 330 AREASIYTGITLAEYYRDQ-GKNVSMMADSTSRWAEALR---EISGRLAEMPADSGYPAY 385
Query: 690 SG 695
G
Sbjct: 386 LG 387
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 32 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 148
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 273 IRSEQIATFIPVTRISCCTDMSTNSGASA*IAAVLSVG-MGXRSSIGSPITLMMRPRVSA 97
+R E++ + I + I+ T+M N SA +V + + +T + +
Sbjct: 737 VRLEKLKSAIEIFDINSATEMPINEPLSASFESVNKENSQSGYMAWQNWVTELSSSNI-- 794
Query: 96 PTGIRIGEPESSTGCPRTKPSVPSMAMV 13
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.5 bits (58), Expect = 1.9
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = -1
Query: 496 DHILELPWMFCLLEKSHQIQSSR 428
D ++++ W +C+L++ H I+++R
Sbjct: 1481 DELVKIDWNYCVLDEGHVIKNAR 1503
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 156 GXRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 22
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 673 TADGIRPSRADTSESSLSETEKCC 602
T D +RPS+ D S S +S EK C
Sbjct: 330 TKDYVRPSQNDISVSQISVDEKIC 353
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 273 IRSEQIATFIPVTRISCC-TDMSTNSGASA*IAAVLSVGM-GXRSSIGSPITLMMRPRVS 100
+++ +++FI + + + TD++ G S +L+ + R +I P L+ V+
Sbjct: 338 LQNSLLSSFIAIVKPNLTFTDIANRLGISVSECFILAKHLIHWRKAIAIPPLLIRNTYVT 397
Query: 99 APTGIRIGEPESSTGCPRTKPSVPSMA 19
+PT E S + PS+PS++
Sbjct: 398 SPTANLFNLEEESKLFKKEFPSLPSLS 424
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = -2
Query: 312 TSSAKQPNLSSFGIRSEQIATFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGXRSSIGS 133
TSS P + ++ ++ +P T SC T S +G S+ ++ ++ + S+ +
Sbjct: 200 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSST 259
Query: 132 PITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVP 28
I + S T P +ST C T S+P
Sbjct: 260 SIPIPPTSTSSTDTN-SSPLPTTSTSC-TTSTSIP 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,906
Number of Sequences: 5004
Number of extensions: 53004
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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