Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0416
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 38 0.006
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 34 0.12
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 33 0.22
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 32 0.50
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.5
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334... 29 3.5
09_04_0159 + 15213752-15214028,15214158-15214399 29 4.7
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 6.2
02_05_0966 - 33143383-33143464,33143946-33144087,33144136-331441... 28 6.2
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 28 8.1
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 114 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 173
Query: 203 FVDMSVQQEILVTGI 247
+ + +E++ TGI
Sbjct: 174 PSERTYPEEMIQTGI 188
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 26 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERXPI 160
+GT G+ + +G ++ PV + LGR+ N G+PID PI
Sbjct: 74 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPI 119
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 516 ARARVALTGLTVAEYFRDQEGQDVLLL--H*QHFSVSLRLDSEVSALLGRIPSAVGYQPY 689
AR TG+T+AEYFRD G +V ++ ++ +LR E+S L +P+ GY Y
Sbjct: 342 AREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALR---EISGRLAEMPADSGYPAY 397
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 516 ARARVALTGLTVAEYFRDQEGQDVLLL--H*QHFSVSLRLDSEVSALLGRIPSAVGYQPY 689
AR TG+T+AEY+RD G +V ++ ++ +LR E+S L +P+ GY Y
Sbjct: 328 AREASIYTGITIAEYYRDM-GYNVSMMADSTSRWAEALR---EISGRLAEMPADSGYPAY 383
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 138 GSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMV 13
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>11_06_0606 +
25432471-25432517,25433098-25433173,25433272-25433448,
25433576-25433653,25433749-25433853,25434042-25434108,
25434219-25434280,25434371-25434510,25434717-25434843,
25434917-25435031,25435220-25435308,25435699-25435782,
25435961-25436737
Length = 647
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 357 GNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIATFI 244
G++ D FH S A T + PN S F +Q+ T +
Sbjct: 19 GHLHDPFHGSRSPARTKRSSHPNFSRFVQGEDQVTTSV 56
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 249 KSRSARSLCQRRKDWVVWRSWCGQN--CIDYGTDQQCCQSPWWLL 377
+S AR+ +R D + WR C D G+ CC P W L
Sbjct: 125 RSGPARARARRHGDLLRWRRTLAAQRPCADDGSVGTCCGGPAWAL 169
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 312 CGQNCIDYGTDQQCCQ 359
C C+ +GTD+QCC+
Sbjct: 268 CKSACLAFGTDEQCCR 283
>02_05_0966 -
33143383-33143464,33143946-33144087,33144136-33144163,
33144453-33144631,33144776-33144866,33145643-33145951
Length = 276
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 134 EPIDERXPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVAICSLLMPKEERLG 295
EP P P + AA PE ++ +++ L T ++ +L M +E LG
Sbjct: 2 EPASSSSPAPAPEAAAAGRRVPEAAELKLRRRTLETVLEQCQRALEMMREADLG 55
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 330 QYSFAHTSSAKQPNLSSFGIRSEQIATFI 244
QY+ H +S + P+LS+F I ++Q+ I
Sbjct: 1205 QYNKGHDASPENPDLSNFMIEAQQLVLLI 1233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,403
Number of Sequences: 37544
Number of extensions: 363286
Number of successful extensions: 1136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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