Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0416
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               139   2e-33
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 86   2e-17
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 32   0.39 
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   1.6  
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 29   4.8  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  139 bits (337), Expect = 2e-33
 Identities = 69/90 (76%), Positives = 75/90 (83%)
 Frame = +2

Query: 8   VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
           VRTIAMDGTEGL+RGQ  +D+G PI IPVG ETLGRIINVIGEPIDER P+ TDK AAIH
Sbjct: 121 VRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIH 180

Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLLMP 277
           AEAPEFV+MS +QEIL TGIKV    LL P
Sbjct: 181 AEAPEFVEMSTEQEILETGIKVV--DLLAP 208



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 38/79 (48%), Positives = 43/79 (54%)
 Frame = +1

Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
           DLLAPYA               TVLIMELINNVAKAHGGYSVFAGVG +     D+   M
Sbjct: 204 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM-GTM 262

Query: 436 IESGVISLKDKTSKVALVY 492
            E    + K   + V  +Y
Sbjct: 263 QERITTTKKGSITSVQAIY 281


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/70 (60%), Positives = 46/70 (65%)
 Frame = +1

Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
           DL+ PYA               TVLI ELINN+AK HGG SVFAGVGERTREGNDL  EM
Sbjct: 11  DLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTREGNDLLREM 70

Query: 436 IESGVISLKD 465
           +ESG+I   D
Sbjct: 71  LESGIIKYGD 80



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 4/63 (6%)
 Frame = +3

Query: 510 PGARARVALTGLTVAEYFRD----QEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVG 677
           PGARARVAL+GLT+AEYFRD     +G+DVL      F  + +  SEVSALLGR+PSAVG
Sbjct: 117 PGARARVALSGLTIAEYFRDGAGEAQGKDVLFFVDNIFRFT-QAGSEVSALLGRMPSAVG 175

Query: 678 YQP 686
           YQP
Sbjct: 176 YQP 178


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +2

Query: 17  IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAE 193
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID + P    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 194 APEFVDMSVQQEILVTGIKVAICSLL 271
           AP  +  +  +E ++TGIK A+ SL+
Sbjct: 71  APGIIPRTSVKEPMLTGIK-AVDSLV 95


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 516 ARARVALTGLTVAEYFRDQEGQDVLLL--H*QHFSVSLRLDSEVSALLGRIPSAVGYQPY 689
           AR     TG+T++EYFRD  G  V ++      ++ +LR   E+S  L  +P+  GY  Y
Sbjct: 180 AREASIYTGITLSEYFRDM-GHHVSMMADSTSRWAEALR---EISGRLAEMPADSGYPAY 235

Query: 690 SG 695
            G
Sbjct: 236 LG 237


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 171 LSVGMGXRSSIGSPITLMMRPRV-SAPTGIRIGEPESSTG 55
           LS G    +S  S +T   +P   SAPTGI  G+P SSTG
Sbjct: 101 LSFGQLGNTST-STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 540 GLTVAEYFRDQEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVGY 680
           G T+ EYFRD+ G+D L+++    S       ++S LL R P    Y
Sbjct: 42  GCTMGEYFRDR-GEDALIVY-DDLSKQAVAYRQISLLLRRPPGREAY 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,820,482
Number of Sequences: 59808
Number of extensions: 395438
Number of successful extensions: 1173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)