Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0416
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 139 2e-33
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 53 2e-07
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 53 2e-07
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 39 0.003
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 36 0.028
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 35 0.064
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 34 0.084
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 31 1.0
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 29 3.2
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 28 5.5
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 28 5.5
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 139 bits (337), Expect = 2e-33
Identities = 70/90 (77%), Positives = 76/90 (84%)
Frame = +2
Query: 8 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
VR IAMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+NVIGEPIDER PI + AAIH
Sbjct: 117 VRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIH 176
Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLLMP 277
AEAPEFV+MSV+QEILVTGIKV LL P
Sbjct: 177 AEAPEFVEMSVEQEILVTGIKVV--DLLAP 204
Score = 132 bits (318), Expect = 3e-31
Identities = 71/121 (58%), Positives = 75/121 (61%)
Frame = +1
Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
DLLAPYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM
Sbjct: 200 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 259
Query: 436 IESGVISLKDKTSKVALVYGQMNEXXXXXXXXXXXXXXXXNISVIKKDRMYCFFIDNIFP 615
IE GVI LK K SKV+LVYGQMNE ++ + FIDNIF
Sbjct: 260 IEGGVIDLKGKNSKVSLVYGQMNEPPGARARVCLTGLTVAEYFRDQEGQDVLLFIDNIFR 319
Query: 616 F 618
F
Sbjct: 320 F 320
Score = 87.0 bits (206), Expect = 1e-17
Identities = 46/59 (77%), Positives = 48/59 (81%)
Frame = +3
Query: 510 PGARARVALTGLTVAEYFRDQEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVGYQP 686
PGARARV LTGLTVAEYFRDQEGQDVLL F + + SEVSALLGRIPSAVGYQP
Sbjct: 285 PGARARVCLTGLTVAEYFRDQEGQDVLLFIDNIFRFT-QAGSEVSALLGRIPSAVGYQP 342
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +2
Query: 17 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAE 193
+ + G + ++R G V +G+ + +PVG LGR+++ +G PID + PI + + + +
Sbjct: 74 VVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVK 133
Query: 194 APEFVDMSVQQEILVTGIKVAICSLL 271
AP + +E +VTG+K A+ SL+
Sbjct: 134 APGIIPRLSVREPMVTGVK-AVDSLV 158
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +2
Query: 17 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAE 193
+ + G + ++R G V +G+ + +PVG LGR+++ +G PID + PI + + + +
Sbjct: 101 VVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVK 160
Query: 194 APEFVDMSVQQEILVTGIKVAICSLL 271
AP + +E +VTG+K A+ SL+
Sbjct: 161 APGIIPRLSVREPMVTGVK-AVDSLV 185
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + + +G +R PV + LGRI N G+PID+ P+ + I+ +
Sbjct: 82 EGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPIN 141
Query: 203 FVDMSVQQEILVTGI 247
+E++ TGI
Sbjct: 142 PWSRIYPEEMIQTGI 156
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 68 SGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 247
+G R PV + LGRI N G+PID+ P+ + I+ + + +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 34.7 bits (76), Expect = 0.064
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 516 ARARVALTGLTVAEYFRDQEGQDVLLL--H*QHFSVSLRLDSEVSALLGRIPSAVGYQPY 689
AR TG+T+AEYFRD G +V ++ ++ +LR E+S LG +P+ GY Y
Sbjct: 311 AREASIYTGITLAEYFRDM-GLNVAMMADSTSRWAEALR---EISGRLGEMPADSGYPAY 366
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 32 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 148
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 125 VIGEPIDERXPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVAICSLL 271
V+G PID + PI + + + +AP + +E +VTG+K A+ SL+
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVK-AVDSLV 150
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 26 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 203 FVDMSV 220
+++V
Sbjct: 210 HAELTV 215
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Frame = -2
Query: 411 FTSTLSYSSKHRVTTMGFGNIVDQFHNQ---YSFAHTSSAKQPNLSSFGIRSEQIATFIP 241
F +T++ H+++ G+ + + YS+ + A +P + + TF P
Sbjct: 413 FVNTIANPGYHQISLKQQGSYAFFVYGKNKLYSYGYEGGANKPTVV-LAPPTTPGPTFYP 471
Query: 240 VTRISCCTDMSTNSGASA*IAAVLSVGMGXRS-SIGSPITL-MMRPRV---SAPTGIRIG 76
VT +S + +T + + + + + +P T+ M P + P G
Sbjct: 472 VTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTG 531
Query: 75 EPESSTGCPRTKPSVPS 25
P + T P TKP+VPS
Sbjct: 532 SPTTQTTAPVTKPTVPS 548
>Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.5 protein.
Length = 233
Score = 29.1 bits (62), Expect = 3.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 312 CGQNCIDYGTDQQCCQSPW 368
C C+ Y TDQ+CC+ +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 29.1 bits (62), Expect = 3.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 312 CGQNCIDYGTDQQCCQSPW 368
C C+ Y TDQ+CC+ +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 370 GYSVFAGVGERTREGNDLYHEMIESGVI--SLKDKTSKVAL 486
GY FAG G+ ND H +I S VI S+++ T V L
Sbjct: 780 GYYAFAGFGQLLNNNND--HTLINSQVIGASIQNATQSVTL 818
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 370 GYSVFAGVGERTREGNDLYHEMIESGVI--SLKDKTSKVAL 486
GY FAG G+ ND H +I S VI S+++ T V L
Sbjct: 780 GYYAFAGFGQLLNNNND--HTLINSQVIGASIQNATQSVTL 818
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,403
Number of Sequences: 27780
Number of extensions: 302053
Number of successful extensions: 904
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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