Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0416
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.39 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.52 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 92  PGYELVSQSLVRVAHGLSLQYRPWQWSEPR 3
           PG EL ++ L  V  GL+L +  W    PR
Sbjct: 66  PGQELPARGLTAVFLGLNLGFLAWAKHNPR 95


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 442 IQSSRGINHFLHEYALLLQQTQSNHH 365
           I S   +  F+ +++L LQQ Q  HH
Sbjct: 82  ILSPTQLQSFMQQHSLYLQQQQQQHH 107


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 368 PWALATLLISSIINTV 321
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 387 SKHRVTTMGFGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIATFIPV 238
           SK R       N  +  +N Y + + +  K+    ++ I  EQI   +PV
Sbjct: 309 SKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPV 358


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 390 SSKHRVTTMGFGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIATFIPV 238
           SS    T     N    ++N+Y++ + +  K+    ++ I  EQI   +PV
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPV 133


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 26  DGTEGLVRGQPVLDSGSPI 82
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,404
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)