Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0416
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 118 5e-27
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 118 5e-27
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 118 5e-27
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 46 2e-05
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 38 0.005
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 38 0.005
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 38 0.006
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 38 0.006
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 38 0.006
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 33 0.18
At2g02650.1 68415.m00204 reverse transcriptase-related similar t... 30 1.7
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 29 3.9
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit... 28 5.1
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 28 5.1
At4g11350.1 68417.m01831 fringe-related protein various hypothet... 28 6.8
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00... 28 6.8
At5g64240.2 68418.m08070 latex-abundant family protein (AMC3) / ... 27 9.0
At5g64240.1 68418.m08069 latex-abundant family protein (AMC3) / ... 27 9.0
At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ... 27 9.0
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 27 9.0
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 27 9.0
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 27 9.0
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 118 bits (283), Expect = 5e-27
Identities = 68/123 (55%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Frame = +1
Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
DLLAPY TVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EM
Sbjct: 216 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 275
Query: 436 IESGVISL--KDKTSKVALVYGQMNEXXXXXXXXXXXXXXXXNISVIKKDRMYCFFIDNI 609
IESGVI L K SK ALVYGQMNE + + FIDNI
Sbjct: 276 IESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNI 335
Query: 610 FPF 618
F F
Sbjct: 336 FRF 338
Score = 114 bits (274), Expect = 6e-26
Identities = 57/90 (63%), Positives = 68/90 (75%)
Frame = +2
Query: 8 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+NV+GEPIDER I T+ IH
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 192
Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLLMP 277
+AP VD++ QEIL TGIKV LL P
Sbjct: 193 RDAPALVDLATGQEILATGIKVV--DLLAP 220
Score = 85.4 bits (202), Expect = 3e-17
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +3
Query: 510 PGARARVALTGLTVAEYFRDQEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVGYQP 686
PGARARV LTGLTVAEYFRD EGQDVLL F + + +SEVSALLGRIPSAVGYQP
Sbjct: 303 PGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFT-QANSEVSALLGRIPSAVGYQP 360
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 118 bits (283), Expect = 5e-27
Identities = 68/123 (55%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Frame = +1
Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
DLLAPY TVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EM
Sbjct: 219 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 278
Query: 436 IESGVISL--KDKTSKVALVYGQMNEXXXXXXXXXXXXXXXXNISVIKKDRMYCFFIDNI 609
IESGVI L K SK ALVYGQMNE + + FIDNI
Sbjct: 279 IESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNI 338
Query: 610 FPF 618
F F
Sbjct: 339 FRF 341
Score = 114 bits (274), Expect = 6e-26
Identities = 57/90 (63%), Positives = 68/90 (75%)
Frame = +2
Query: 8 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+NV+GEPIDER I T+ IH
Sbjct: 136 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 195
Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLLMP 277
+AP VD++ QEIL TGIKV LL P
Sbjct: 196 RDAPALVDLATGQEILATGIKVV--DLLAP 223
Score = 85.4 bits (202), Expect = 3e-17
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +3
Query: 510 PGARARVALTGLTVAEYFRDQEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVGYQP 686
PGARARV LTGLTVAEYFRD EGQDVLL F + + +SEVSALLGRIPSAVGYQP
Sbjct: 306 PGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFT-QANSEVSALLGRIPSAVGYQP 363
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 118 bits (283), Expect = 5e-27
Identities = 68/123 (55%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Frame = +1
Query: 256 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 435
DLLAPY TVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EM
Sbjct: 216 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 275
Query: 436 IESGVISL--KDKTSKVALVYGQMNEXXXXXXXXXXXXXXXXNISVIKKDRMYCFFIDNI 609
IESGVI L K SK ALVYGQMNE + + FIDNI
Sbjct: 276 IESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNI 335
Query: 610 FPF 618
F F
Sbjct: 336 FRF 338
Score = 114 bits (274), Expect = 6e-26
Identities = 57/90 (63%), Positives = 68/90 (75%)
Frame = +2
Query: 8 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+NV+GEPIDER I T+ IH
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 192
Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLLMP 277
+AP VD++ QEIL TGIKV LL P
Sbjct: 193 RDAPALVDLATGQEILATGIKVV--DLLAP 220
Score = 85.4 bits (202), Expect = 3e-17
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +3
Query: 510 PGARARVALTGLTVAEYFRDQEGQDVLLLH*QHFSVSLRLDSEVSALLGRIPSAVGYQP 686
PGARARV LTGLTVAEYFRD EGQDVLL F + + +SEVSALLGRIPSAVGYQP
Sbjct: 303 PGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFT-QANSEVSALLGRIPSAVGYQP 360
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +2
Query: 8 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIH 187
V + G + G V +GS + +P G LGR+++ +G PID + + + +
Sbjct: 343 VGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRVE 402
Query: 188 AEAPEFVDMSVQQEILVTGIKVAICSLL 271
+AP ++ E + TG+K A+ SL+
Sbjct: 403 VKAPGILERKSVHEPMQTGLK-AVDSLV 429
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 73 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 132
Query: 203 FVDMSVQQEILVTGI 247
+ + +E++ TGI
Sbjct: 133 PSERTYPEEMIQTGI 147
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 73 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 132
Query: 203 FVDMSVQQEILVTGI 247
+ + +E++ TGI
Sbjct: 133 PSERTYPEEMIQTGI 147
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + V +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 72 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 131
Query: 203 FVDMSVQQEILVTGI 247
+ + +E++ TGI
Sbjct: 132 PSERTYPEEMIQTGI 146
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + V +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 72 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 131
Query: 203 FVDMSVQQEILVTGI 247
+ + +E++ TGI
Sbjct: 132 PSERTYPEEMIQTGI 146
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 DGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERXPIPTDKTAAIHAEAPE 202
+GT G+ + V +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 72 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 131
Query: 203 FVDMSVQQEILVTGI 247
+ + +E++ TGI
Sbjct: 132 PSERTYPEEMIQTGI 146
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 516 ARARVALTGLTVAEYFRDQEGQDVLLL--H*QHFSVSLRLDSEVSALLGRIPSAVGYQPY 689
AR TG+T+AEYFRD G +V ++ ++ +LR E+S L +P+ GY Y
Sbjct: 325 AREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALR---EISGRLAEMPADSGYPAY 380
>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278
Length = 365
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 249 KSRSARSLCQRRKDWVVWRSWCGQNCIDYGTDQQCCQSP 365
K+++ SL + W++WR W +N + QQ CQSP
Sbjct: 128 KTQTTNSLDRFLPFWIMWRLWKSRNVFLF---QQKCQSP 163
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 391 VGERTREGNDLYHEMIESGVISLKDKTSKVALV 489
V + T++ N EM+ESG+ S+ +K++ V V
Sbjct: 1368 VSKETKQNNSSIGEMVESGLQSINNKSAMVGAV 1400
>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
factor identical to cleavage and polyadenylation
specificity factor [Arabidopsis thaliana]
SWISS-PROT:Q9LKF9
Length = 739
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 292 QSFLLWHKERADRDFYTSYENLLLHRHVDKL 200
+SFL W + + F TS +N L RHV L
Sbjct: 278 KSFLEWMSDSISKSFETSRDNAFLLRHVTLL 308
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 430 RGINHFLHEYALLLQQTQSNHHGL 359
R +NH LH++ L+L + NH+ L
Sbjct: 465 RKLNHALHKHTLILDTSPQNHYDL 488
>At4g11350.1 68417.m01831 fringe-related protein various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 489
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 322 FCPHQLRQTTQSFLLWHKERADRDFYTSYENLLLHRHVDKLWSFSMN 182
F P ++ +++FL W+K RAD Y + H K + F M+
Sbjct: 359 FSPREMEMPSRTFLNWYK-RADYTAYAFNTRPVSRNHCQKPFVFHMS 404
>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
F-box domain
Length = 338
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 460 LEKSHQIQSSRGINHFLHEYALLLQQTQSNHHGLWQHC*SVP*SIQF 320
L+ SH I LH LLL T+ N H +W C IQF
Sbjct: 79 LKDSHSNSEQVDIVQVLHCDGLLLCTTKDNRHVVWNPCLGETHWIQF 125
>At5g64240.2 68418.m08070 latex-abundant family protein (AMC3) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 362
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 442 IQSSRGINHFLHEYALLLQQTQSNHH 365
+ +RG N +H + LL+Q Q HH
Sbjct: 39 VDIARGANRIIHGFQQLLRQHQPQHH 64
>At5g64240.1 68418.m08069 latex-abundant family protein (AMC3) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 305
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 442 IQSSRGINHFLHEYALLLQQTQSNHH 365
+ +RG N +H + LL+Q Q HH
Sbjct: 39 VDIARGANRIIHGFQQLLRQHQPQHH 64
>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1889
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 379 VFAGVGERTREGNDLYHEMIESG 447
+FAG REGN +HE I+ G
Sbjct: 1493 IFAGFNSTLREGNVTHHEYIQVG 1515
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = -1
Query: 505 RSFDHILELPWMFCLLEKSHQIQSSR-----GINHFLHEYALLLQQT--QSNHHGLW 356
+ D++ + W +C+L++ H I++++ + ++ L+L T Q+N LW
Sbjct: 1561 KDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELW 1617
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 379 VFAGVGERTREGNDLYHEMIESG 447
+FAG REGN +HE I+ G
Sbjct: 1452 IFAGFNSTLREGNVTHHEYIQVG 1474
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
synthase 1 nearly identical to callose synthase 1
catalytic subunit [Arabidopsis thaliana] GI:13649388
Length = 1922
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 379 VFAGVGERTREGNDLYHEMIESG 447
+FAG REGN +HE I+ G
Sbjct: 1415 IFAGFNSTLREGNVTHHEYIQVG 1437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,291
Number of Sequences: 28952
Number of extensions: 283705
Number of successful extensions: 906
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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