Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0415
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1781 + 39832977-39833284,39835083-39835261,39836085-398361...    33   0.14 
01_03_0028 - 11783122-11783381,11783668-11784163                       27   9.4  

>01_06_1781 +
           39832977-39833284,39835083-39835261,39836085-39836170,
           39836205-39836293,39837477-39837579,39837940-39837968,
           39838668-39838830,39838901-39838954,39839443-39839621,
           39839869-39840001
          Length = 440

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 377 ATEVNVATENIINICFFANVIFFKRSQ*I*KYKREVKKAQTLPICYYNSCLGC 219
           A++V++     +N+    +V    + + + KY R +    T PIC YN C GC
Sbjct: 317 ASQVDMIKPMYLNVSISYDVKVLNKER-LPKYARRMLIGSTAPICTYNECRGC 368


>01_03_0028 - 11783122-11783381,11783668-11784163
          Length = 251

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 251 PICYYNSCLGCPRP*IDHRNSLTLCS 174
           P+C++   L  PRP   H + +TLCS
Sbjct: 132 PVCFFAEALRPPRPGY-HEDDITLCS 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,344
Number of Sequences: 37544
Number of extensions: 209536
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)