Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0415
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    27   8.5  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical
           protein K07F5.12 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 265 FFTSLLYFYIYCDLLKKITFAKKQILI 345
           F  S LYF+ YC +L++  + ++ ++I
Sbjct: 245 FLFSTLYFFAYCVILRRKAYVERNLII 271


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 244 QMGNVCAFFTSLLYFYIYCDLLKKITFAKKQILIMFSVATLT 369
           ++G VC    + +  Y+    ++KIT A K ++I+FS+  ++
Sbjct: 19  RVGFVCTCLFNAILIYLTAFHVEKITGAYKHLIILFSLICMS 60


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 244 QMGNVCAFFTSLLYFYIYCDLLKKITFAKKQILIMFSVATLT 369
           ++G VC    + +  Y+    ++KIT A K ++I+FS+  ++
Sbjct: 19  RVGFVCTCLFNAILIYLTAFHVEKITGAYKHLIILFSLICMS 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,593
Number of Sequences: 27780
Number of extensions: 221850
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)