Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0415
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.4  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   2.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   2.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 170 KIKLSHQLFIEKLLRCTTMQLFV 102
           KIK  H +F+  +L  +   LFV
Sbjct: 270 KIKRKHNVFVNNILAASACSLFV 292


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 172 KKLNCHINCLLRNF 131
           +KL C+ NC+L  F
Sbjct: 66  EKLKCYFNCVLEKF 79


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 480 NSACSNTSTKANTYQYLQF*NIHY 409
           +S  +NT    N Y+ LQ+ NI+Y
Sbjct: 305 SSLLNNTIHNNNNYKKLQYYNINY 328


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 480 NSACSNTSTKANTYQYLQF*NIHY 409
           +S  +NT    N Y+ LQ+ NI+Y
Sbjct: 316 SSLLNNTIHNNNNYKKLQYYNINY 339


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 480 NSACSNTSTKANTYQYLQF*NIHY 409
           +S  +NT    N Y+ LQ+ NI+Y
Sbjct: 316 SSLLNNTIHNNNNYKKLQYYNINY 339


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 480 NSACSNTSTKANTYQYLQF*NIHY 409
           +S  +NT    N Y+ LQ+ NI+Y
Sbjct: 305 SSLLNNTIHNNNNYKKLQYYNINY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,428
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)