Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    45   0.001
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    40   0.041

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 21/32 (65%), Positives = 23/32 (71%)
 Frame = -2

Query: 146 MVDGNHSPPGRPYARLPTRAIKKLITKFQNII 51
           M DGNHSP GRPYA LPTRA  KL + F  +I
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKLTSLFIFVI 32


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 39.9 bits (89), Expect = 0.041
 Identities = 16/20 (80%), Positives = 20/20 (100%)
 Frame = -1

Query: 195  INGRKRLGSAPGIADVHGRR 136
            ++GR+RLGSAPGIA+VHGRR
Sbjct: 967  LSGRQRLGSAPGIAEVHGRR 986


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,281,527
Number of Sequences: 1657284
Number of extensions: 8895427
Number of successful extensions: 20048
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20046
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)