Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.34 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.34 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.34 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.34 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.34 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.34 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.34 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.34 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.34 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   3.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 89  SNSNATKSSGLTSPLSVST-------SPPGKP 113


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 206 SNNESTVESGLALPLALLTSMVDGNHSPPGRP 111
           SN+ +T  SGL  PL++ T       SPPG+P
Sbjct: 133 SNSNATKSSGLTSPLSVST-------SPPGKP 157


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 373 SFVMFTXYTSLML 335
           SF++FT Y+SL+L
Sbjct: 281 SFLLFTLYSSLLL 293


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 373 SFVMFTXYTSLML 335
           SF++FT Y+SL+L
Sbjct: 207 SFLLFTLYSSLLL 219


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 410 IIHIKCSNF 436
           ++H KCSNF
Sbjct: 304 VVHKKCSNF 312


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -2

Query: 137 GNHSPPGRPYARLP 96
           G   P G PY R P
Sbjct: 71  GGQPPQGMPYPRFP 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,044
Number of Sequences: 336
Number of extensions: 2711
Number of successful extensions: 22
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)