Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    29   0.63 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   5.9  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 LIHDSFIFTTFVYFSSCEHDRDTSRYGIRGLSR 305
           L +D+ IF TF Y      D+D  R G RG+ +
Sbjct: 400 LANDTHIFNTFFYNRLTSKDKDGKRLGHRGVRK 432


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 215 MNQSNNESTVESGLALPLALLTSMVDGNHSPP 120
           +N SNN S+   G  LP   LT + + ++ PP
Sbjct: 72  INNSNNSSSNTGGNVLPNPALTPVRNMSNKPP 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,440
Number of Sequences: 5004
Number of extensions: 40189
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)