Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0416 + 23307984-23308281,23310083-23310900                       27   8.0  
11_06_0344 + 22540436-22540737,22541304-22543545                       27   8.0  

>11_06_0416 + 23307984-23308281,23310083-23310900
          Length = 371

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 164 LALLTSMVDGNHSPPGRPYARLPTRAIKKLIT 69
           ++LL +  DG+H PP R      TR+  + IT
Sbjct: 108 ISLLAAAHDGSHPPPPRSDQSTATRSFPRFIT 139


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 88  ALVGRRAYGRPGGEWLPSTMDVSNARGRAKPLSTVDSL 201
           ALVG R   RP   WLPS   V+ + G  +P  T + L
Sbjct: 30  ALVGSRDLERPRSPWLPSE-PVNCSGGLGRPWMTPEPL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,115
Number of Sequences: 37544
Number of extensions: 235581
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)