Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)                 28   6.2  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  27   8.2  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 27   8.2  

>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 231 TTFVYFSSCEHDRDTSRYGIRGLSR*QCHVAHTAHNINDVY 353
           T +   S+ ++D  ++RY I  +S  QC +  T H+I+D++
Sbjct: 162 TRYDIVSTTQYDTQSTRYDI--VSTTQCDIVSTNHSIHDLH 200


>SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)
          Length = 275

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 101 DEHTADLVVSGYRRPWTSAMPGAEPSRFLPLIHY 202
           +E   +L+   +R P+   +P  + S F+P IHY
Sbjct: 109 EEFWDELLSFSFRVPYNRCLPLVDCSHFMPAIHY 142


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 224 KTIMNQSNNESTVESGLALPLALLTSMVDGNHSPPGRPYARLPT 93
           K +    N  +   SG+  PLA  TS  D  H P G P A  PT
Sbjct: 19  KDLKMNGNTIAPDSSGIFSPLASSTSASDSRHRPVGGP-AYSPT 61


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 467 IKCEFFYNTTQSYYILCELWNR-LFEVVAC 381
           I  EFF +TT S+YI+  +W    ++ + C
Sbjct: 466 IMSEFFNDTTTSFYIILIVWTADQYDAICC 495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,484
Number of Sequences: 59808
Number of extensions: 296921
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)