Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   9.5  

>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 293  SYSITTRISIVFT**KIYKCSENKTI--MNQSNNESTVESGLALPLALLTSMVDGNHSPP 120
            S +++T  +   T   IY C    T   +  +NN +T+E+GL+       + +D   SPP
Sbjct: 1618 SATLSTMYNGALTNATIYTCDPVSTCYQLGMNNNCTTIENGLSGCCCSTDACLDPTVSPP 1677

Query: 119  GRP 111
              P
Sbjct: 1678 RTP 1680


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 293  SYSITTRISIVFT**KIYKCSENKTI--MNQSNNESTVESGLALPLALLTSMVDGNHSPP 120
            S +++T  +   T   IY C    T   +  +NN +T+E+GL+       + +D   SPP
Sbjct: 1618 SATLSTMYNGALTNATIYTCDPVSTCYQLGMNNNCTTIENGLSGCCCSTDACLDPTVSPP 1677

Query: 119  GRP 111
              P
Sbjct: 1678 RTP 1680


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,913
Number of Sequences: 27780
Number of extensions: 228804
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)