Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.5  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.6  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = -2

Query: 248 KIYKCSENKTIMNQSNNESTVE-------SGLALPLALLTSMVDGNHSPPGRPYARLPTR 90
           KI     NKTI N +NN   ++         + +P+ +   +  GN  P  RP    P  
Sbjct: 80  KIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPIPVPVYYGNFLP--RPMG--PWI 135

Query: 89  AIKKLITKFQNIIP 48
           +I++ I +F++I P
Sbjct: 136 SIQEQIPRFRHIGP 149


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 488 ILCVLVVFMYYN 523
           I C+++VF+YYN
Sbjct: 354 IPCIIMVFLYYN 365


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 299 QTSYSITTRISIVFT**KIYKCSENKTIMNQSNNESTVESGLALPLALLTS 147
           + +YS   R+ +  +    Y+CS      N+  +    +S +A+P A+  S
Sbjct: 97  KVTYSGLWRVCVAISSRMEYECSRIDYFPNEEYSPDPSDSTMAIPYAVTKS 147


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 458 EFFYNTTQSYY 426
           E FY T+Q YY
Sbjct: 201 EIFYTTSQQYY 211


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 294 LLFHNDSYLYRVHMMKNIQ 238
           LL +ND YLY+  M  N Q
Sbjct: 371 LLSNNDVYLYQNTMSNNNQ 389


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 294 LLFHNDSYLYRVHMMKNIQ 238
           LL +ND YLY+  M  N Q
Sbjct: 409 LLSNNDVYLYQNTMSNNNQ 427


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 248 KIYKCSENKTIMNQSNN 198
           KI     NKTI N +NN
Sbjct: 80  KIISSLSNKTIHNNNNN 96


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 248 KIYKCSENKTIMNQSNN 198
           KI     NKTI N +NN
Sbjct: 80  KIISSLSNKTIHNNNNN 96


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 248 KIYKCSENKTIMNQSNN 198
           KI     NKTI N +NN
Sbjct: 80  KIISSLSNKTIHNNNNN 96


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 248 KIYKCSENKTIMNQSNN 198
           KI     NKTI N +NN
Sbjct: 313 KIISSLSNKTIHNNNNN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,806
Number of Sequences: 438
Number of extensions: 2762
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)