Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0414
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    27   6.7  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    27   8.8  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    27   8.8  
At3g23320.1 68416.m02941 hypothetical protein                          27   8.8  

>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 118 PGGEWLPSTMDVSNARGRAKPLSTVDSLFD*FM 216
           P GE++PS   +   RG+   +  VD  FD F+
Sbjct: 219 PIGEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 118 PGGEWLPSTMDVSNARGRAKPLSTVDSLFD*FM 216
           P GE++PS   +   RG    +  VD  FD F+
Sbjct: 218 PVGEYIPSLSWIDRIRGLDHKMEVVDKRFDEFL 250


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 118 PGGEWLPSTMDVSNARGRAKPLSTVDSLFD*FM 216
           P GE++PS   +   RG    +  VD  FD F+
Sbjct: 218 PVGEYIPSLSWIDRIRGLDHKMEVVDKRFDEFL 250


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 115 RPGGEWLPSTMDVSNARGR 171
           +PG EW+    DVSN  GR
Sbjct: 32  KPGAEWVKCNYDVSNHAGR 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,859,132
Number of Sequences: 28952
Number of extensions: 198205
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)