Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0413
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.48 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   2.0  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    27   3.4  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 18  HISNWIEQKLSKEFEKVLVLPNMEDIIIDIMTPTPVQ 128
           ++ N+I QKL +   + +V+PNM D+   I    P++
Sbjct: 367 YLINFITQKLVELVHETIVMPNMNDLAFFIDNEAPIK 403


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 396 IFMYYLKRNYSLFFIIGXVCDANIFLXFWMWQ 491
           I  YY  R YS  F IG       F+ FW  Q
Sbjct: 200 ILGYYFLRPYSYIFAIGVALWGAFFIQFWRVQ 231


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 342 DNLISFYLRFIFCKV 298
           D ++ FYLR+++CK+
Sbjct: 379 DTIVDFYLRYLYCKL 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,597
Number of Sequences: 5004
Number of extensions: 43961
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)