Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0413
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0308 + 42649617-42649631,42650585-42650640,42652683-426530...    30   1.5  
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836...    29   4.7  
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786...    29   4.7  

>01_07_0308 +
           42649617-42649631,42650585-42650640,42652683-42653096,
           42653180-42653292,42653438-42653886,42653967-42654056
          Length = 378

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 284 YHYLKGCLNLQKNPWLL-NSEKPQC 213
           YHYLK C N+ K+ WLL  S K +C
Sbjct: 328 YHYLKLCKNIIKHWWLLPESVKVEC 352


>03_04_0085 -
           17182662-17182963,17183044-17183101,17183564-17183638,
           17183730-17183864,17183986-17184165,17184315-17184365,
           17184537-17184637,17185562-17185620,17185701-17185816,
           17186668-17186853,17187337-17187399,17187440-17187521,
           17188221-17188312,17189153-17189296,17190056-17190136,
           17190815-17190898,17191465-17191566,17191922-17192017,
           17192239-17192299,17192418-17192521
          Length = 723

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 36  EQKLSKEFEKVLVLPNMEDIIID 104
           E KLSK  E ++V P M DII+D
Sbjct: 152 ESKLSKFVEDIIVPPRMIDIIVD 174


>01_01_0994 -
           7861310-7862119,7862378-7862498,7862718-7862901,
           7862975-7863070,7863428-7863476,7863555-7863596,
           7863684-7863836,7865631-7865705,7866462-7866587
          Length = 551

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  FTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIMTPTP 122
           F  IS W+++ +   F + LV PNM  I ++    TP
Sbjct: 111 FPGISGWLDKLMDTAFGQTLVEPNMLVIDVEKFVSTP 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,051
Number of Sequences: 37544
Number of extensions: 224159
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)