Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0413
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34453| Best HMM Match : DUF1610 (HMM E-Value=5.5)                   29   3.6  
SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)                   29   4.8  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  29   4.8  
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47)                   29   4.8  

>SB_34453| Best HMM Match : DUF1610 (HMM E-Value=5.5)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 387 NFNFITSNKQFVMCIDNLISFYLRFI-FCKVFFYCISLLKRMP 262
           N  +I+  +  + C+ + + F+ R++ FC++FF    +L R P
Sbjct: 64  NDQYISQGEDVMTCMTHEVEFHPRWLLFCRIFFADFLILIRSP 106


>SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 149 LKKYSLELHRCWRHYIDNDILHVRQNEDLFEFFAQLLLDPVGDV 18
           +KK +L+L   W   ++N+I +V+ N  ++E    L LD +G V
Sbjct: 141 MKKETLKLVEIWNLKLNNEITYVKNN--VYEDVKHLSLDIIGRV 182


>SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 FRHFGLKKYSLELHRCWRHYIDNDI 90
           FR   LKK +  L  CW+H I N I
Sbjct: 133 FRSSNLKKEAERLDNCWKHCIANSI 157


>SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 FRHFGLKKYSLELHRCWRHYIDNDI 90
           FR   LKK +  L  CW+H I N I
Sbjct: 165 FRSSNLKKEAERLDNCWKHCIANSI 189


>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 FRHFGLKKYSLELHRCWRHYIDNDI 90
           FR   LKK +  L  CW+H I N I
Sbjct: 206 FRSSNLKKEAERLDNCWKHCIANSI 230


>SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 149 LKKYSLELHRCWRHYIDNDILHVRQNEDLFEFFAQLLLDPVGDV 18
           +KK +L+L   W   ++N+I +V+ N  ++E    L LD +G V
Sbjct: 310 MKKETLKLVEIWNLKLNNEITYVKNN--VYEDVKHLSLDIIGRV 351


>SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 528

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 FRHFGLKKYSLELHRCWRHYIDNDI 90
           FR   LKK +  L  CW+H I N I
Sbjct: 247 FRSSNLKKEAERLDNCWKHCIANSI 271


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +3

Query: 15  THISNWIEQKLSKEFE 62
           TH+++WIE+KL +EF+
Sbjct: 923 THVTDWIEKKLKQEFK 938


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 FRHFGLKKYSLELHRCWRHYIDNDI 90
           FR   LKK +  L  CW+H I N I
Sbjct: 211 FRSSNLKKEAERLDNCWKHCIANSI 235


>SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 FRHFGLKKYSLELHRCWRHYIDNDI 90
           FR   LKK +  L  CW+H I N I
Sbjct: 90  FRSSNLKKEAERLDNCWKHCIANSI 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,381
Number of Sequences: 59808
Number of extensions: 291068
Number of successful extensions: 607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)