Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0413
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical p...    29   2.4  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   3.2  

>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 21  ISNWIEQKLSKEFEKVLVLPNMEDIIIDIMTPTPV 125
           +S WIE KL +  EK LV PNM+DII+ +++  P+
Sbjct: 835 VSEWIETKLRQVLEKNLVCPNMDDIILPVLSGNPL 869


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 21  ISNWIEQKLSKEFEKVLVLPNMEDIIIDIMTPTPV 125
           +S WIE KL +  EK LV PNM+DII+ +++  P+
Sbjct: 884 VSEWIETKLRQVLEKNLVCPNMDDIILPVLSGNPL 918


>Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.9 protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 122 RCWRHYIDNDILHVRQNEDLFEFFAQLLLDPVGDVRETSC 3
           R WR YI  +I+ ++ ++ L  F   L   P   V + SC
Sbjct: 7   RAWREYISYEIIRLQMHQILTLFLLALAASPSQAVTDRSC 46


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 38  AEAEQRIRKGPRFAEHGGYHYRYNDANTGAV 130
           +E+E+R R+ PR AE  G HY+  +ANT  +
Sbjct: 880 SESERR-RQPPRDAEDNGNHYKKMNANTDQI 909


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,530
Number of Sequences: 27780
Number of extensions: 242082
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)