Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0413
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    29   3.9  
At1g53590.1 68414.m06088 C2 domain-containing protein                  29   3.9  

>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 21  ISNWIEQKLSKEFEKVLVLPNMEDIIIDI 107
           I+ W+++ LS  FE+ LV PNM  +++D+
Sbjct: 235 IAGWLDKLLSVAFEQTLVEPNM--LVVDM 261


>At1g53590.1 68414.m06088 C2 domain-containing protein
          Length = 751

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 21  ISNWIEQKLSKEFEKVLVLPNMEDIIIDI 107
           I+ W+++ LS  FE+ LV PNM  +++D+
Sbjct: 235 IAGWLDKLLSIAFEQTLVQPNM--LVVDM 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,086
Number of Sequences: 28952
Number of extensions: 204706
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)