Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB70D1 Cluster: PREDICTED: similar to Karyopheri...    60   7e-08
UniRef50_UPI0000E49505 Cluster: PREDICTED: similar to GA10419-PA...    46   0.001
UniRef50_A5UWR9 Cluster: Helix-turn-helix, type 11 domain protei...    35   2.2  
UniRef50_A3DIS3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_A2TX11 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q2UH52 Cluster: ABC-type Fe3+ transport system; n=1; As...    34   3.9  
UniRef50_Q62C50 Cluster: Conserved domain protein; n=20; Proteob...    33   5.2  
UniRef50_O60518 Cluster: Ran-binding protein 6; n=68; Eumetazoa|...    33   6.8  
UniRef50_Q0LIV4 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_UPI0000DB70D1 Cluster: PREDICTED: similar to Karyopherin  3
            CG1059-PA; n=1; Apis mellifera|Rep: PREDICTED: similar to
            Karyopherin  3 CG1059-PA - Apis mellifera
          Length = 1040

 Score = 59.7 bits (138), Expect = 7e-08
 Identities = 26/58 (44%), Positives = 41/58 (70%)
 Frame = +2

Query: 38   RVLATLAEAFRADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKXALQIAL 211
            R+++  AEAF  DAVP DNPV  ++++++RQIQ+N  +F +C+  L+ D + AL  AL
Sbjct: 977  RLISFFAEAFYKDAVPTDNPVMGRILSIVRQIQNNESMFQACINALTADQQQALHEAL 1034


>UniRef50_UPI0000E49505 Cluster: PREDICTED: similar to GA10419-PA;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to GA10419-PA - Strongylocentrotus purpuratus
          Length = 174

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 20/57 (35%), Positives = 38/57 (66%)
 Frame = +2

Query: 41  VLATLAEAFRADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKXALQIAL 211
           +L+ +AEAF  +A+ ++  V+ +   ++R++Q+N EL+  CL  L+ +H+ AL  AL
Sbjct: 113 ILSVIAEAFAREALTDNEEVFRKCSNIVREVQNNNELWALCLTQLNEEHQHALVTAL 169


>UniRef50_A5UWR9 Cluster: Helix-turn-helix, type 11 domain protein;
           n=4; Chloroflexi (class)|Rep: Helix-turn-helix, type 11
           domain protein - Roseiflexus sp. RS-1
          Length = 323

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 448 WADSNCCDIPYRFMPGEMV-RCISPYLRSCQQFRDCTY 558
           WAD  C DI YR M GE   R I PYL    +    +Y
Sbjct: 149 WADRQCVDIRYRAMNGETTQRVIEPYLLEVARSEPASY 186


>UniRef50_A3DIS3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 249

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 473 ISQQFESAQYKHLYENY-YYSSRKKTINKWSDVL 375
           +  +   ++YK+ Y +Y YY+S+KK I KWS ++
Sbjct: 204 VLNKISKSEYKNYYGSYDYYNSKKKYIKKWSQLI 237


>UniRef50_A2TX11 Cluster: Putative uncharacterized protein; n=1;
           Polaribacter dokdonensis MED152|Rep: Putative
           uncharacterized protein - Polaribacter dokdonensis
           MED152
          Length = 850

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -3

Query: 544 GTVDMTVNMEKCIAPFHQA*TGKVYHSNSNQPNISTYMKTIIILLERKQLTNGVMY 377
           G+VD+T  +EK +APF    +GK Y        +S+ +  II+L+  +  TN   Y
Sbjct: 579 GSVDLTNILEKELAPFDH--SGKNYEIKGETVELSSSVAPIIVLVFHELTTNSAKY 632


>UniRef50_Q2UH52 Cluster: ABC-type Fe3+ transport system; n=1;
           Aspergillus oryzae|Rep: ABC-type Fe3+ transport system -
           Aspergillus oryzae
          Length = 445

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 328 GADDCSWNYCYNYKIVNTSLHLLI 399
           G+ DCSW+Y +NY+I   S HL +
Sbjct: 18  GSPDCSWHYSHNYRIYLFSSHLTV 41


>UniRef50_Q62C50 Cluster: Conserved domain protein; n=20;
           Proteobacteria|Rep: Conserved domain protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 657

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +1

Query: 448 WADSNCCDIPYRFMPGEMVRCISPYLRSCQQFRDCTY*KFDMTQDGLICSKSQLLTHY 621
           W  SN  D  +RF+P        P        RD T+     TQDG +CS S  L  Y
Sbjct: 520 WITSNMSDRIFRFVPSTQTFITYPLPTRVTWLRDMTF-----TQDGAVCSSSSNLPAY 572


>UniRef50_O60518 Cluster: Ran-binding protein 6; n=68; Eumetazoa|Rep:
            Ran-binding protein 6 - Homo sapiens (Human)
          Length = 1105

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 13/59 (22%), Positives = 36/59 (61%)
 Frame = +2

Query: 38   RVLATLAEAFRADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKXALQIALS 214
            ++++ +AE    + +  ++P   ++  ++RQ+Q++ +L+  C+  L ++ + ALQ  L+
Sbjct: 1045 KIISIIAEGKINETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLN 1103


>UniRef50_Q0LIV4 Cluster: Putative uncharacterized protein; n=1;
           Herpetosiphon aurantiacus ATCC 23779|Rep: Putative
           uncharacterized protein - Herpetosiphon aurantiacus ATCC
           23779
          Length = 254

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 527 RKYGEMHRTISPGINR*GISQQFESAQ 447
           +KYGE   TI PGIN  G+   F++AQ
Sbjct: 45  KKYGEHLATIYPGINAIGVESSFDAAQ 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,659,166
Number of Sequences: 1657284
Number of extensions: 12264800
Number of successful extensions: 30492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30468
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)