Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.8  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 519 WRNASHHFTRHKPVRYIT 466
           + +AS H   H+PV Y+T
Sbjct: 153 YSSASRHHVDHQPVPYLT 170


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 407 FEKNNNSFHISAYIGLIRIAVIYLTGLCLVKWCD 508
           +EK N +F   A + ++R+   ++  L L+  CD
Sbjct: 242 YEKTNVTFVHLAVLNILRVGKNFVCLLSLIILCD 275


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 26  DAPQRVL--ATLAEAFRADAVPNDNPVYAQMVALLRQIQ 136
           D+ Q  L  +TLA A  +   P+ +P  +    LLR IQ
Sbjct: 260 DSQQAALNYSTLASAVASANGPSQDPSISSTETLLRNIQ 298


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 184 PQGSSSDSSVHIVTTPYRRPAPYSATP 264
           P   +S    H   +P  +PA + +TP
Sbjct: 68  PSSDTSQDLQHSYQSPQTQPARFYSTP 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,053
Number of Sequences: 336
Number of extensions: 3805
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)