Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.5  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    26   6.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.0  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.0  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   8.0  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 484 TGKVYHSNSNQPNISTYMKTIIILLERKQLTNGVMY*QFYNYNNNSMNSH 335
           T  + H     PN      ++ IL   K L N   +  F+NYNN++++S+
Sbjct: 459 TNLLMHLEKTSPNSDVDGVSMTILTICKILLNNFDW-NFFNYNNSAIDSY 507


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 446 YKHL-YENYYYSSRKKTINKWSDVLTI 369
           Y HL Y+N+ Y S    I++W+++L++
Sbjct: 221 YTHLSYKNWAYKSDWLIIDRWNEMLSV 247


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
 Frame = +1

Query: 184 PQGSSSDSSVHIVTTPYRRPAPYSATPATYKLLHVILMA*HVFIVKAQGADDCSWN---- 351
           P   SSD+  H+++ P+    PYSA    +  L   +    V       +DD   N    
Sbjct: 19  PMRPSSDAPYHVLSLPFSH--PYSAFLDAWSWLFCGITGGEVSFFFFPVSDDVIPNTNPK 76

Query: 352 --YCYNYKIVNTSLHLLIVF 405
              CY Y   N+ L  L VF
Sbjct: 77  NCQCYLYHSTNSQLEPLEVF 96


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 97  CLCANGCITSTDTV 138
           CL  +GCITS +TV
Sbjct: 64  CLACSGCITSAETV 77


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 601 ILNKSGHLASCRTSNMYNHGT--VDMTVN 521
           +LN +GH++S    N+Y+ G   +D  VN
Sbjct: 314 LLNSTGHVSSLACDNLYHAGAPLIDHIVN 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,010
Number of Sequences: 5004
Number of extensions: 54704
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)