Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   29   3.7  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   29   3.7  
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)                     29   4.9  
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)                   28   8.5  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)                  28   8.5  
SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)                      28   8.5  

>SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 335

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 427 FSYKCLYWADSNCCDIPYRFMPGEMVRC 510
           F   C  W    C +IP R  P ++ RC
Sbjct: 143 FCSGCSLWVHKKCSNIPGRLTPNQLFRC 170


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 427 FSYKCLYWADSNCCDIPYRFMPGEMVRC 510
           F   C  W    C +IP R  P ++ RC
Sbjct: 460 FCSGCSLWVHKKCSNIPGRLTPNQLFRC 487


>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 623 LCSMLCCFVNIYTIAWEC 676
           +CS  C +V+++ IAW C
Sbjct: 207 MCSPSCAYVDVFPIAWSC 224


>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
          Length = 1346

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 427  FSYKCLYWADSNCCDIPYRFMPGEMVRC 510
            F   C  W    C +IP R  P  + RC
Sbjct: 1263 FCSGCSLWVHKKCSNIPGRLTPNPLFRC 1290


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 427 FSYKCLYWADSNCCDIPYRFMPGEMVRC 510
           F   C  W    C +IP R  P  + RC
Sbjct: 799 FCSGCSLWVHKKCSNIPGRLTPNPLFRC 826


>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
          Length = 622

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 427 FSYKCLYWADSNCCDIPYRFMPGEMVRC 510
           F   C  W    C +IP R  P  + RC
Sbjct: 404 FCSGCSLWVHKKCSNIPGRLTPNPLFRC 431


>SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)
          Length = 251

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 427 FSYKCLYWADSNCCDIPYRFMPGEMVRC 510
           F   C  W    C +IP R  P  + RC
Sbjct: 101 FCSGCSLWVHKKCSNIPGRLTPNPLFRC 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,335,616
Number of Sequences: 59808
Number of extensions: 418727
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)