Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052104-1|AAK93528.1|  712|Drosophila melanogaster SD05186p pro...    41   0.002
AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ...    41   0.002
BT011135-1|AAR82802.1|  405|Drosophila melanogaster GM14490p pro...    29   4.7  
BT001788-1|AAN71543.1|  245|Drosophila melanogaster RH23428p pro...    29   4.7  
AY118289-1|AAM48318.1|  393|Drosophila melanogaster AT18469p pro...    29   4.7  
AE014297-3989|AAN14084.1|  393|Drosophila melanogaster CG5484-PB...    29   4.7  
AE014297-3988|AAF56617.1|  397|Drosophila melanogaster CG5484-PA...    29   4.7  
AE014297-3987|AAN14083.1|  402|Drosophila melanogaster CG5484-PC...    29   4.7  

>AY052104-1|AAK93528.1|  712|Drosophila melanogaster SD05186p
           protein.
          Length = 712

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 18/57 (31%), Positives = 35/57 (61%)
 Frame = +2

Query: 38  RVLATLAEAFRADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKXALQIA 208
           R+++ +AE+F    V   +    +M+ +++Q++SN E+  +C  TLS + + ALQ A
Sbjct: 646 RIVSIIAESFCTKVVEAQSATGTRMLTIVKQVESNPEVMAACASTLSPEQQQALQDA 702


>AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA
            protein.
          Length = 1105

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 18/57 (31%), Positives = 35/57 (61%)
 Frame = +2

Query: 38   RVLATLAEAFRADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKXALQIA 208
            R+++ +AE+F    V   +    +M+ +++Q++SN E+  +C  TLS + + ALQ A
Sbjct: 1039 RIVSIIAESFCTKVVEAQSATGTRMLTIVKQVESNPEVMAACASTLSPEQQQALQDA 1095


>BT011135-1|AAR82802.1|  405|Drosophila melanogaster GM14490p
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 498 NGAMHFSIFTVMSTVP*LYILEVRHDARWPDLFKIATANALRYVVCYAALLISTLLLGSV 677
           + AM +SIF ++     LY++ V+   +  DL        +  VVC   L++STL   S 
Sbjct: 256 SSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVC---LMVSTLFFKSG 312

Query: 678 YIL 686
           Y +
Sbjct: 313 YYI 315


>BT001788-1|AAN71543.1|  245|Drosophila melanogaster RH23428p
           protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 498 NGAMHFSIFTVMSTVP*LYILEVRHDARWPDLFKIATANALRYVVCYAALLISTLLLGSV 677
           + AM +SIF ++     LY++ V+   +  DL        +  VVC   L++STL   S 
Sbjct: 96  SSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVC---LMVSTLFFKSG 152

Query: 678 YIL 686
           Y +
Sbjct: 153 YYI 155


>AY118289-1|AAM48318.1|  393|Drosophila melanogaster AT18469p
           protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 498 NGAMHFSIFTVMSTVP*LYILEVRHDARWPDLFKIATANALRYVVCYAALLISTLLLGSV 677
           + AM +SIF ++     LY++ V+   +  DL        +  VVC   L++STL   S 
Sbjct: 244 SSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVC---LMVSTLFFKSG 300

Query: 678 YIL 686
           Y +
Sbjct: 301 YYI 303


>AE014297-3989|AAN14084.1|  393|Drosophila melanogaster CG5484-PB,
           isoform B protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 498 NGAMHFSIFTVMSTVP*LYILEVRHDARWPDLFKIATANALRYVVCYAALLISTLLLGSV 677
           + AM +SIF ++     LY++ V+   +  DL        +  VVC   L++STL   S 
Sbjct: 244 SSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVC---LMVSTLFFKSG 300

Query: 678 YIL 686
           Y +
Sbjct: 301 YYI 303


>AE014297-3988|AAF56617.1|  397|Drosophila melanogaster CG5484-PA,
           isoform A protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 498 NGAMHFSIFTVMSTVP*LYILEVRHDARWPDLFKIATANALRYVVCYAALLISTLLLGSV 677
           + AM +SIF ++     LY++ V+   +  DL        +  VVC   L++STL   S 
Sbjct: 248 SSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVC---LMVSTLFFKSG 304

Query: 678 YIL 686
           Y +
Sbjct: 305 YYI 307


>AE014297-3987|AAN14083.1|  402|Drosophila melanogaster CG5484-PC,
           isoform C protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 498 NGAMHFSIFTVMSTVP*LYILEVRHDARWPDLFKIATANALRYVVCYAALLISTLLLGSV 677
           + AM +SIF ++     LY++ V+   +  DL        +  VVC   L++STL   S 
Sbjct: 253 SSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVC---LMVSTLFFKSG 309

Query: 678 YIL 686
           Y +
Sbjct: 310 YYI 312


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,370,482
Number of Sequences: 53049
Number of extensions: 603277
Number of successful extensions: 1557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)