Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022976-16|AAC69076.2|  276|Caenorhabditis elegans Nuclear horm...    29   2.4  
AF332213-1|AAK17984.1|  213|Caenorhabditis elegans nuclear recep...    29   3.2  
AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    29   3.2  
AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormo...    29   4.3  
AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear recep...    28   7.5  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    28   7.5  

>AF022976-16|AAC69076.2|  276|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 132 protein.
          Length = 276

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 45  WPHSPKRFAPTLYQTITLSMRKWLHYFDRYSQM 143
           +PHS K     +++   L++ +WL YFD + ++
Sbjct: 174 FPHSSKEDVLKIWEFYFLTVARWLTYFDEFQKL 206


>AF332213-1|AAK17984.1|  213|Caenorhabditis elegans nuclear receptor
           NHR-99 protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 75  TLYQTITLSMRKWLHYFDRYSQMPNYL 155
           TL+Q   L   KWL YF  + Q+P+ L
Sbjct: 42  TLWQDDFLKTAKWLTYFSEFQQLPDGL 68


>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 75  TLYQTITLSMRKWLHYFDRYSQMPNYL 155
           TL+Q   L   KWL YF  + Q+P+ L
Sbjct: 202 TLWQDDFLKTAKWLTYFSEFQQLPDGL 228


>AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 130 protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 69  APTLYQTITLSMRKWLHYFDRYSQMPN 149
           A T ++T  L++ KWL YFD +  +P+
Sbjct: 224 ALTFWETDFLTVAKWLTYFDDFQLLPH 250


>AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear receptor
           NHR-98 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  LYQTITLSMRKWLHYFDRYSQMPN 149
           L++   L M KWL YFD + ++P+
Sbjct: 138 LWEEEMLRMAKWLTYFDDFQRLPH 161


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  LYQTITLSMRKWLHYFDRYSQMPN 149
           L++   L M KWL YFD + ++P+
Sbjct: 218 LWEEEMLRMAKWLTYFDDFQRLPH 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,414
Number of Sequences: 27780
Number of extensions: 313648
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)