Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0411
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11420.1 68416.m01393 fringe-related protein similar to hypot...    28   5.2  
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    27   9.2  
At4g10500.1 68417.m01722 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.2  

>At3g11420.1 68416.m01393 fringe-related protein similar to
           hypothetical protein GB:AAC23643 [Arabidopsis thaliana] 
           + weak similarity to Fringe [Schistocerca
           gregaria](GI:6573138);Fringe encodes an extracellular
           protein that regulates Notch signalling.
          Length = 505

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -3

Query: 85  WYSVGAKRFGECG--QHT 38
           WYS+G K +G CG  +HT
Sbjct: 431 WYSIGDKNYGHCGKIEHT 448


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 181 RPQGSSSDSSVHIVTTPYRRPAPYSATPATYK 276
           RP+G ++ S    V TP   P P   TP+  K
Sbjct: 530 RPEGRTTASPTSQVVTPVTHPEPVKITPSPKK 561


>At4g10500.1 68417.m01722 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to hyoscyamine 6 beta-hydroxylase
           [Atropa belladona][GI:4996123]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 349

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -3

Query: 577 ASCRTSNMY---NHGTVDMTVNMEKCIAP--FHQA*TGKVYHSNSNQPNISTYMKT 425
           ++C T   +   NHG  D TVN  + +A   FHQ  + +V H +++ P  +T + T
Sbjct: 66  SACSTYGFFQIKNHGVPDTTVNKMQTVAREFFHQPESERVKHYSAD-PTKTTRLST 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,477
Number of Sequences: 28952
Number of extensions: 269429
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)