Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0410
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    28   1.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    28   1.4  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    26   4.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.5  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   9.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   9.5  

>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 282 GVQPMSREPPD*D*TYTLNGEVYVWMRILGLSEIGGNTGSGETVELSEWL 431
           G+ P+S   P    T  + G+VY    +L  S+I G+     +V+L EWL
Sbjct: 475 GLTPLSSHFPSAA-TGLVGGQVYPQSSVLQSSKINGSAKVQPSVKLPEWL 523


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 299 RHWLHSLMDDIVTLLGTDT*NYVMSFYYYLCK 204
           + W   +MDD++   G D+ NY   F  YL +
Sbjct: 885 KQWALCMMDDLIEFTGPDSWNYKDHFLPYLAE 916


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 262 VTMSSIKEC--NQCRGSPPTRTKLIPLMVK-FMYGCG 363
           V +S +  C  N+C G+P   +KL PL +K F + CG
Sbjct: 32  VYVSCVNRCIENKCHGNPSDTSKL-PLDLKLFRWDCG 67


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 353 YINFTIKGISLVLVGGLPRHWLHSLMDDIVTLLGT 249
           Y N T++G S  L  G+    +H  M D+V ++ T
Sbjct: 214 YFNITVEGPSADLHSGVFGGTVHEPMTDLVAIMST 248


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 633 DSLIPYKDNFEPLNSKLNKIIDKPQVLISDDNHYNS 526
           +S I Y D  EPL+  LNK ++K +++  D   + S
Sbjct: 174 ESKIGYAD--EPLSELLNKCMEKLEIVEQDPQFWQS 207


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 591 SKLNKIIDKPQVLISDDNHYNSLSL 517
           S+LN I+    VL  +DNH++SLS+
Sbjct: 342 SQLNPILRSENVL-QNDNHHSSLSM 365


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 126 LNSGDPRLNKY-IKIKNSENTLMFKVNF 206
           ++ G+P    + I+  NSEN  +FK NF
Sbjct: 174 VSEGEPTAETFAIRFANSENANLFKENF 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,234
Number of Sequences: 5004
Number of extensions: 43709
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)