Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0410
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12...    28   5.6  

>05_01_0018 +
           125697-126130,126231-126356,126726-126825,126950-126969,
           127118-127220,127331-127469,127577-127791,127873-128523
          Length = 595

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 244 VSVPSNVTMSSIKECNQCRGSPPTRTK 324
           VS P  VT S+ K   +  GSP TRT+
Sbjct: 562 VSSPRRVTRSNAKASGEADGSPATRTR 588


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,626,015
Number of Sequences: 37544
Number of extensions: 282553
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)