Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0410
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_39725| Best HMM Match : UPF0259 (HMM E-Value=7.3)                   29   3.3  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    28   7.6  
SB_16333| Best HMM Match : SET (HMM E-Value=0.0053)                    28   7.6  
SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      28   7.6  

>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 526  IISNCITIVIVLSLALVYKLYKISNRXIPPRFNH 425
            ++S+C+ ++IV+   L +  YK  N  +  RF H
Sbjct: 1031 VVSSCVAVIIVIFEVLTFVSYKAHNTAVADRFQH 1064


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 360 RILGLSEIGGNTGSGETVELSEWLNLGG 443
           R+L L E+G NT +G+T  L +WL+L G
Sbjct: 804 RVLCLQEMGHNTAAGKT--LMKWLHLDG 829


>SB_39725| Best HMM Match : UPF0259 (HMM E-Value=7.3)
          Length = 208

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 496 VLSLALVYKLYKISNRXIPPRFNH 425
           VLS++L+Y   K+++  IP R NH
Sbjct: 23  VLSISLLYVFIKVNHEQIPKRLNH 46


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 472 KLYKISNRX-IPPRFNHSDNSTVSPDPVLPPIS 377
           K+ +IS +  +PP   HS ++   P PVLPP+S
Sbjct: 310 KISQISRKIYVPPTNVHSVSTGNQPLPVLPPVS 342


>SB_16333| Best HMM Match : SET (HMM E-Value=0.0053)
          Length = 483

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 636 RDSLIPYKDNFEPLNSKLNKIIDKPQVLISDDNHYNSL 523
           ++SL+ Y+DN +  +   +  +  PQ+L++   H+N+L
Sbjct: 308 KESLMDYEDNLDSPSLPSHLELLTPQLLLTSPKHHNNL 345


>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
 Frame = -3

Query: 523 ISNCITIVIVLSLALVYKLYKISNRXIPPRF------NHSDNSTVSP--DPVLPPISDNP 368
           IS  + + +V+   LV    +I+   +PP        +H D+    P  DP LP I+D P
Sbjct: 575 ISGFLVLTLVVIFVLVRFQRRINGEFVPPNIQITCDEDHGDDRAFPPFVDPSLPCITDVP 634

Query: 367 R 365
           +
Sbjct: 635 K 635


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,450
Number of Sequences: 59808
Number of extensions: 315824
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)