Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0410
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-9|AAK84592.1|   90|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    28   5.0  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    27   8.8  
AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear recep...    27   8.8  
AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear recep...    27   8.8  
AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormo...    27   8.8  
AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormo...    27   8.8  

>AC084153-9|AAK84592.1|   90|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.3 protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 517 NCITIVIVLSLALVYKLYKISNRXIPPRFNHSDNSTVSPDPVLPPI 380
           +C+T  + + +A+ + L  +    +  R     + TV+PDPV P I
Sbjct: 41  SCLTFAMCIMIAMFFVLIILVAIYLKDRVIFGPSPTVTPDPVKPSI 86


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 526 IISNCITIVIVLSLALVYKLYKISNRXIPPRFNHSDNSTVS 404
           I+S CI++ ++L L++   L     R  P + NH +  ++S
Sbjct: 862 IVSMCISLALLLLLSISSHLMAFEFRKFPGKRNHQEIESIS 902


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 465  IRSATVXSLLDSTIPITQPSLQI---QYYLLFLITLESASIHKL 343
            I S  V ++  ST+ ++   LQI    ++ LFLIT+ S+++H L
Sbjct: 1230 ILSGPVVTMAGSTMFLSGAHLQIITVYFFKLFLITIVSSAVHAL 1273


>AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 356 PYINFTIKGISLVLVGGLPRHWLHSLMDDIVTLLGTDT*NYVMSFYYY--LCKVHF 195
           PY N  +K     L  G+ +H    +MD    + G D  NY  S + Y  +C V F
Sbjct: 99  PYENAPLKMFDYKLSQGMSKHDFVMIMDYARGMPGFDEMNYADSVFCYRLVCAVDF 154


>AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 356 PYINFTIKGISLVLVGGLPRHWLHSLMDDIVTLLGTDT*NYVMSFYYY--LCKVHF 195
           PY N  +K     L  G+ +H    +MD    + G D  NY  S + Y  +C V F
Sbjct: 187 PYENAPLKMFDYKLSQGMSKHDFVMIMDYARGMPGFDEMNYADSVFCYRLVCAVDF 242


>AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform b protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 356 PYINFTIKGISLVLVGGLPRHWLHSLMDDIVTLLGTDT*NYVMSFYYY--LCKVHF 195
           PY N  +K     L  G+ +H    +MD    + G D  NY  S + Y  +C V F
Sbjct: 186 PYENAPLKMFDYKLSQGMSKHDFVMIMDYARGMPGFDEMNYADSVFCYRLVCAVDF 241


>AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform a protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 356 PYINFTIKGISLVLVGGLPRHWLHSLMDDIVTLLGTDT*NYVMSFYYY--LCKVHF 195
           PY N  +K     L  G+ +H    +MD    + G D  NY  S + Y  +C V F
Sbjct: 186 PYENAPLKMFDYKLSQGMSKHDFVMIMDYARGMPGFDEMNYADSVFCYRLVCAVDF 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,192
Number of Sequences: 27780
Number of extensions: 240629
Number of successful extensions: 561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)