Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DM53 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_Q9LXN4 Cluster: Protein HIRA; n=1; Arabidopsis thaliana...    36   1.3  
UniRef50_A2EDQ9 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_UPI00015B548A Cluster: PREDICTED: hypothetical protein;...    33   6.7  

>UniRef50_A3DM53 Cluster: Putative uncharacterized protein; n=1;
           Staphylothermus marinus F1|Rep: Putative uncharacterized
           protein - Staphylothermus marinus (strain ATCC 43588 /
           DSM 3639 / F1)
          Length = 460

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 678 PSIYKGHYTLFLNPPRLYAETPVIRSWKIRRQYKI*LKSGYVLISQSLLLLASDEAKYKV 499
           P +Y     LFL P RL A +PVI  W  R  Y + +   +++ S++L +L    +   +
Sbjct: 68  PYVYGPGLVLFLAPLRLLASSPVIHYWD-RDGYHVYVSMDWIIASKTLFILFDILSTIMI 126

Query: 498 YPLRK 484
           Y + K
Sbjct: 127 YVIIK 131


>UniRef50_Q9LXN4 Cluster: Protein HIRA; n=1; Arabidopsis
           thaliana|Rep: Protein HIRA - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 1051

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 23/88 (26%), Positives = 44/88 (50%)
 Frame = +3

Query: 435 LQKTKEILKMKNLNILIFSAGKLCILLHHWPVEVVIVK*VHSQILIIFYIAGESSMILLR 614
           L  T ++ +MKN  +LIF  G L + L  W  +  ++    +  +I   ++   S +++ 
Sbjct: 733 LSSTVKVKRMKNWYLLIFLVGDLVVELLSWYEDSSVIDLDCTIKVISVKLSKSGSPLVVL 792

Query: 615 ASLHTDVGDLKIMCSGLYISMDCIWKNN 698
           A+ H  + D  +MC  L ++ DC   +N
Sbjct: 793 ATRHAFLFDTSLMC-WLRVADDCFPASN 819


>UniRef50_A2EDQ9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 937

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 681 NPSIYKGHYTLFLNPPRLYAETPVIRSWKIRRQYKI-*LKSGYVLISQSLLLLASDEAKY 505
           NP +  G Y +F  PP +Y     +  W IR++Y +   +S    ++ S+ L+  D   +
Sbjct: 556 NPQVKDGEYFIFRAPPTVYKINGNVPEWYIRKRYYVPGFESSIDKLTDSMFLMGGDARSF 615


>UniRef50_UPI00015B548A Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 1031

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 294 QQKQKHGRXKLYIKLNNHKYNYSRLHA-SKIVE 199
           Q ++KHG  ++ +KLN H++NYS + A SK V+
Sbjct: 52  QCQEKHGPSQMKVKLNWHRHNYSEIQADSKPVQ 84


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,498,366
Number of Sequences: 1657284
Number of extensions: 10756116
Number of successful extensions: 21374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21365
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)