Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   6.0  

>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 LFF*TSHV*SKFSRKKKNTNSVVDNIKIIIDLIFYVLSRA 2
           L+F  SH   + +   +N NS+VD+I I  D +  V S A
Sbjct: 78  LYFPASHQQIQLTLHLENQNSIVDSIHINADTVLPVWSEA 117


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 473 KYFNFLSG*TLYFASSLASRSSDCEIST----*PDFNYILYCRRIF 598
           K F+F +   +Y A SL SR S  EIS+     PDF  +L   R++
Sbjct: 45  KAFSFKNQDQIYGAGSLKSRFSTHEISSEKNDSPDFTLVLPSNRLY 90


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 185 FKKTFTVQYTVYV*SSFKTRFSFLLNKS 102
           F+++FT++ ++Y   SFK   + +L KS
Sbjct: 79  FRQSFTIEGSIYEVGSFKVAIANVLQKS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,874
Number of Sequences: 5004
Number of extensions: 51557
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)