Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.3  
SB_11923| Best HMM Match : Toxin_3 (HMM E-Value=0.32)                  28   8.4  

>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 486 FSAGKLCILLHHWP---VEVVIVK*VHSQILIIFYIAGESSMILLRASLHTDVG 638
           +++G  CI+L HWP   + + I+  +   I+++F  AG   ++  +A L   VG
Sbjct: 170 YASGTGCIVLLHWPWRFLLIFIIGFLVPLIIMVFCYAGILVVVSSKARLSNRVG 223


>SB_11923| Best HMM Match : Toxin_3 (HMM E-Value=0.32)
          Length = 884

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 582 IAGESSMILLRASLHT--DVGDLKIMCSGLYISMDCIWK 692
           I  E+ +I L  +  +  D+ D KI+C G Y + D  WK
Sbjct: 470 INAETEVIFLDEASESILDIDDWKILCQGGYTAHDAKWK 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,464
Number of Sequences: 59808
Number of extensions: 337759
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)