Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008586-1|AAH08586.1|  602|Homo sapiens leucine rich repeat con...    31   5.2  
BC003407-1|AAH03407.2|  581|Homo sapiens LRRC40 protein protein.       31   5.2  
AL353771-3|CAI22332.1|  602|Homo sapiens leucine rich repeat con...    31   5.2  
AK022951-1|BAB14326.1|  602|Homo sapiens protein ( Homo sapiens ...    31   5.2  
AK000338-1|BAA91094.1|  384|Homo sapiens protein ( Homo sapiens ...    31   5.2  

>BC008586-1|AAH08586.1|  602|Homo sapiens leucine rich repeat
           containing 40 protein.
          Length = 602

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +3

Query: 327 ISLHFNKRFYTSMSVCVLYEISX*SAQN*FIYH*SLLQKTKEILKMKNLNILIFSAGKLC 506
           + L FNK  + S+ +CVL +++    +N F+   SL ++ + +++++ +N L F+  K+ 
Sbjct: 454 VDLSFNKLSFISLELCVLQKLTFLDLRNNFLN--SLPEEMESLVRLQTIN-LSFNRFKML 510

Query: 507 --ILLHHWPVEVVIV 545
             +L   + +E +++
Sbjct: 511 PEVLYRIFTLETILI 525


>BC003407-1|AAH03407.2|  581|Homo sapiens LRRC40 protein protein.
          Length = 581

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +3

Query: 327 ISLHFNKRFYTSMSVCVLYEISX*SAQN*FIYH*SLLQKTKEILKMKNLNILIFSAGKLC 506
           + L FNK  + S+ +CVL +++    +N F+   SL ++ + +++++ +N L F+  K+ 
Sbjct: 433 VDLSFNKLSFISLELCVLQKLTFLDLRNNFLN--SLPEEMESLVRLQTIN-LSFNRFKML 489

Query: 507 --ILLHHWPVEVVIV 545
             +L   + +E +++
Sbjct: 490 PEVLYRIFTLETILI 504


>AL353771-3|CAI22332.1|  602|Homo sapiens leucine rich repeat
           containing 40 protein.
          Length = 602

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +3

Query: 327 ISLHFNKRFYTSMSVCVLYEISX*SAQN*FIYH*SLLQKTKEILKMKNLNILIFSAGKLC 506
           + L FNK  + S+ +CVL +++    +N F+   SL ++ + +++++ +N L F+  K+ 
Sbjct: 454 VDLSFNKLSFISLELCVLQKLTFLDLRNNFLN--SLPEEMESLVRLQTIN-LSFNRFKML 510

Query: 507 --ILLHHWPVEVVIV 545
             +L   + +E +++
Sbjct: 511 PEVLYRIFTLETILI 525


>AK022951-1|BAB14326.1|  602|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12889 fis, clone NT2RP2004098, weakly similar to
           ADENYLATE CYCLASE (EC 4.6.1.1). ).
          Length = 602

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +3

Query: 327 ISLHFNKRFYTSMSVCVLYEISX*SAQN*FIYH*SLLQKTKEILKMKNLNILIFSAGKLC 506
           + L FNK  + S+ +CVL +++    +N F+   SL ++ + +++++ +N L F+  K+ 
Sbjct: 454 VDLSFNKLSFISLELCVLQKLTFLDLRNNFLN--SLPEEMESLVRLQTIN-LSFNRFKML 510

Query: 507 --ILLHHWPVEVVIV 545
             +L   + +E +++
Sbjct: 511 PEVLYRIFTLETILI 525


>AK000338-1|BAA91094.1|  384|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20331 fis, clone HEP10410. ).
          Length = 384

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +3

Query: 327 ISLHFNKRFYTSMSVCVLYEISX*SAQN*FIYH*SLLQKTKEILKMKNLNILIFSAGKLC 506
           + L FNK  + S+ +CVL +++    +N F+   SL ++ + +++++ +N L F+  K+ 
Sbjct: 236 VDLSFNKLSFISLELCVLQKLTFLDLRNNFLN--SLPEEMESLVRLQTIN-LSFNRFKML 292

Query: 507 --ILLHHWPVEVVIV 545
             +L   + +E +++
Sbjct: 293 PEVLYRIFTLETILI 307


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,551,116
Number of Sequences: 237096
Number of extensions: 1522617
Number of successful extensions: 2218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)