Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical p...    27   9.8  

>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 304 ICRQERSLSHYILINASILRCLCVCCMKLVXSLHKINLYII 426
           I  QE SLSHY + +  IL   C+ C+ +  S + I   II
Sbjct: 212 IKHQETSLSHYFVFH-MILIAFCLICLAITASCYFILFRII 251


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 242 WLFNFIYNFXLPCFCFCCSI*FVAKRG 322
           WL+ F+    LP  C CC I     RG
Sbjct: 222 WLWIFVIGIVLPTLCCCCCIYCCCCRG 248


>Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B3.12 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 36  MILMLSTTLFVFFFFRENLLYT*LVQKKRKSSLKATLYIYSILYC 170
           ++L+ STT  +FF++         ++  +K+    T+YIY+++ C
Sbjct: 15  LVLIFSTTFLIFFYWT--------IRTYKKNDKLPTIYIYTMILC 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,496
Number of Sequences: 27780
Number of extensions: 279005
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)