Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   2.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   2.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   2.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   2.8  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   6.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   6.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.5  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 249 NNHKYNYSRLHASKIVEVYVNI 184
           NN+KYNY+  + +K  ++Y NI
Sbjct: 93  NNYKYNYNNNNYNK--KLYYNI 112


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 249 NNHKYNYSRLHASKIVEVYVNI 184
           NN+KYNY+  + +K  ++Y NI
Sbjct: 93  NNYKYNYNNNNYNK--KLYYNI 112


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 249 NNHKYNYSRLHASKIVEVYVNI 184
           NN+KYNY+  + +K  ++Y NI
Sbjct: 93  NNYKYNYNNNNYNK--KLYYNI 112


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 249 NNHKYNYSRLHASKIVEVYVNI 184
           NN+KYNY+  + +K  ++Y NI
Sbjct: 93  NNYKYNYNNNNYNK--KLYYNI 112


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 352 SILRCLCVCCMKLVXSLHKINLYI 423
           S L CL  C MK +  L    LY+
Sbjct: 64  SQLGCLKACVMKRIEMLKGTELYV 87


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 217 CLKDC*GLRQYLK 179
           CL++C G +QYL+
Sbjct: 164 CLENCTGYQQYLR 176


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 352 SILRCLCVCCMKLVXSLHKINLYI 423
           S L CL  C MK +  L    LY+
Sbjct: 64  SQLGCLKACVMKRIEMLKGTELYV 87


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 249 NNHKYNYSRLHASKIVEVYV 190
           NN+KYNY+  +     + Y+
Sbjct: 327 NNYKYNYNNYNKKLYYKNYI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,229
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)