Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0409
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44530.1 68416.m04786 transducin family protein / WD-40 repea...    36   0.034
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    35   0.045

>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
           family protein contains 6 (4 significant) WD-40 repeats
           (PF0400); nuclear protein HIRA, mouse, PIR:S68141
          Length = 1051

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 23/88 (26%), Positives = 44/88 (50%)
 Frame = +3

Query: 435 LQKTKEILKMKNLNILIFSAGKLCILLHHWPVEVVIVK*VHSQILIIFYIAGESSMILLR 614
           L  T ++ +MKN  +LIF  G L + L  W  +  ++    +  +I   ++   S +++ 
Sbjct: 733 LSSTVKVKRMKNWYLLIFLVGDLVVELLSWYEDSSVIDLDCTIKVISVKLSKSGSPLVVL 792

Query: 615 ASLHTDVGDLKIMCSGLYISMDCIWKNN 698
           A+ H  + D  +MC  L ++ DC   +N
Sbjct: 793 ATRHAFLFDTSLMC-WLRVADDCFPASN 819


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +3

Query: 498 KLCILLHHWPVEVVIVK*VHSQILIIFYIAGESSMILLRASLHTDVGDLKIMCSGLYISM 677
           K+  LL  W V   +V   H  +++ F +  +  M+    S+H  + DL  +C+GL++  
Sbjct: 121 KVLFLLRVWWVFFFVVSCYH--LVVDFVLYKKQEMV----SVHFVISDLVGVCAGLFLCC 174

Query: 678 DCIWK 692
            C+WK
Sbjct: 175 SCLWK 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,070
Number of Sequences: 28952
Number of extensions: 238731
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)