Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0408
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   8.9  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 183 LLIFNFFSALMFLCTFLYMKNQNYNKI 103
           +++  F+SA  F+   LY+ NQ YN +
Sbjct: 269 VMLLTFWSAF-FIVNVLYICNQCYNTV 294


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 274 TGHLIVIHKHVIGY 233
           TG+L ++H+H  GY
Sbjct: 4   TGNLGIMHRHCFGY 17


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 182 YLFLIFLVHLCF 147
           Y F+IF VHL F
Sbjct: 118 YAFIIFTVHLLF 129



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 176 FLIFLVHLCFC 144
           F+IF +HL FC
Sbjct: 173 FIIFTMHLLFC 183


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 174 K*VNLTLCSILMFIFIIT*QYPITCLWMTIRWPVHGFEILSECYKIV*FFSHWSDLHLN 350
           K V L L ++++  FI    +     W+ +      FEI  E Y  + +FS     H+N
Sbjct: 288 KQVILMLGTVVLAFFICLLPFRALTFWIIVAPAGSNFEIGFENYYNILYFSRIM-FHIN 345


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 183 LLIFNFFSALMFLCTFLY 130
           +L+  FF +L+ LC  +Y
Sbjct: 252 ILVVQFFCSLVALCLTMY 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,212
Number of Sequences: 336
Number of extensions: 3151
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)