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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0408
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)                     29   2.5  
SB_35076| Best HMM Match : Paf1 (HMM E-Value=0.83)                     29   2.5  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               28   5.8  
SB_33058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
          Length = 406

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 176 FLIFLVHLCFCVLSCT*KTRIITKSKLLTEEKRKAACL*LAYERYINCFYLIFYFS 9
           F +F + +C C    T KT  + K+      K+       A   ++NCFY +FY +
Sbjct: 283 FGVFALFVCICTEHKTTKTTRVAKAVNTNTNKKHYG---KASFYFVNCFYSLFYIA 335


>SB_35076| Best HMM Match : Paf1 (HMM E-Value=0.83)
          Length = 1010

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 644 HVWPRVCGTHLTPSTQGAH-SSLYALKKCQD 555
           H  PR+CG+  TPS QG   SS+  + + Q+
Sbjct: 416 HYLPRICGSWKTPSVQGGRLSSITGVHQIQE 446


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 381 GHVY*FIFILSSNEDRTNARKIRQSCSILIE 289
           GHVY FIF+    E+R + RKI+      +E
Sbjct: 25  GHVYGFIFLFKWIEERRSRRKIQHIDESFVE 55


>SB_33058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 421 LYNKLNWRKSTNNEIFLFITFFVYVPD*CGQNYNK 525
           LYN LN +K  NNE+ L+I   V      G NY K
Sbjct: 20  LYNLLNLKKKVNNEL-LYIANVVERSHCFGPNYEK 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,013,433
Number of Sequences: 59808
Number of extensions: 352703
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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