BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0408 (655 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41691| Best HMM Match : CstA (HMM E-Value=0.62) 29 2.5 SB_35076| Best HMM Match : Paf1 (HMM E-Value=0.83) 29 2.5 SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) 28 5.8 SB_33058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 >SB_41691| Best HMM Match : CstA (HMM E-Value=0.62) Length = 406 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -3 Query: 176 FLIFLVHLCFCVLSCT*KTRIITKSKLLTEEKRKAACL*LAYERYINCFYLIFYFS 9 F +F + +C C T KT + K+ K+ A ++NCFY +FY + Sbjct: 283 FGVFALFVCICTEHKTTKTTRVAKAVNTNTNKKHYG---KASFYFVNCFYSLFYIA 335 >SB_35076| Best HMM Match : Paf1 (HMM E-Value=0.83) Length = 1010 Score = 29.5 bits (63), Expect = 2.5 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -3 Query: 644 HVWPRVCGTHLTPSTQGAH-SSLYALKKCQD 555 H PR+CG+ TPS QG SS+ + + Q+ Sbjct: 416 HYLPRICGSWKTPSVQGGRLSSITGVHQIQE 446 >SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) Length = 537 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 381 GHVY*FIFILSSNEDRTNARKIRQSCSILIE 289 GHVY FIF+ E+R + RKI+ +E Sbjct: 25 GHVYGFIFLFKWIEERRSRRKIQHIDESFVE 55 >SB_33058| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 115 Score = 27.9 bits (59), Expect = 7.6 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 421 LYNKLNWRKSTNNEIFLFITFFVYVPD*CGQNYNK 525 LYN LN +K NNE+ L+I V G NY K Sbjct: 20 LYNLLNLKKKVNNEL-LYIANVVERSHCFGPNYEK 53 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,013,433 Number of Sequences: 59808 Number of extensions: 352703 Number of successful extensions: 513 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 513 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1669334250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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