Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0408
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z49071-1|CAA88873.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical
           protein F33C8.2 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 339 DRTNARKIRQSCSILIEFQNREPA 268
           DR N  K+ +  SIL EFQN++PA
Sbjct: 2   DRENTEKLCRRFSILNEFQNKQPA 25


>Z49071-1|CAA88873.2|  269|Caenorhabditis elegans Hypothetical
           protein T22C8.1 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -3

Query: 542 WLFIDRLL*FCPH*SGT*TKKVMNKNISLFVDLRQFNLLYNF*-ISILTTNIRMMGMYIS 366
           W++I+ ++ F  +  GT TK    K IS+   L   N+L  F  +S     I M+GMY+ 
Sbjct: 66  WVYINFIV-FWNYNFGT-TKTFSRKTISMKEVLLGTNILTKFFTLSSTCLPIAMLGMYLV 123

Query: 365 LFSF*VQMK 339
           +F F V+ +
Sbjct: 124 IFIFIVKKR 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,348
Number of Sequences: 27780
Number of extensions: 273540
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)