Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0406
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    95   7e-21
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    89   5e-19
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.13 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   4.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   4.9  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   4.9  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   4.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   8.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   8.5  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 47/79 (59%), Positives = 55/79 (69%)
 Frame = +1

Query: 19  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 198
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 199 KFPLTSEAAMKKIEDNNTL 255
             P+ SE+AMKKIED+NTL
Sbjct: 63  VNPINSESAMKKIEDDNTL 81



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 39/61 (63%), Positives = 48/61 (78%)
 Frame = +3

Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
           LVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+V+L+ D DALDVAN+IG 
Sbjct: 81  LVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGF 140

Query: 432 I 434
           +
Sbjct: 141 L 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 44/79 (55%), Positives = 53/79 (67%)
 Frame = +1

Query: 19  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 198
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 199 KFPLTSEAAMKKIEDNNTL 255
             P+ SE+AMKKIED+NTL
Sbjct: 63  VNPINSESAMKKIEDDNTL 81



 Score = 81.8 bits (193), Expect = 5e-17
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = +3

Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
           LVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+V+L+ D DALDVAN+IG 
Sbjct: 81  LVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGF 140

Query: 432 I 434
           +
Sbjct: 141 L 141


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 449 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 333
           +W +++ A FV +   + +S    +RFL  ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 407 QCVIISSESYVRFLLTIRPDECVDFSNIY 321
           +C+ I  E +  FL  I+P E V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 52   VKGEHGKRVRKIRNSVHFRRP-----KTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTS 216
            ++ ++ +R R+ RNS+ +         T + P     PRK    R + ++ + +  PL+ 
Sbjct: 1439 LEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSSLSTPLSQ 1498

Query: 217  EAAMKKIEDNNTLS 258
            E+++ +    NT S
Sbjct: 1499 ESSLARSGRKNTPS 1512


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 443 NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 348
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 464 FYS*KIWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 333
           F S  +W ++  A F+ +   + ++    +RFL  +RP +C D+
Sbjct: 503 FVSWCLWITVLVAKFLESYFFLTLNLADSIRFLGAMRPYDCRDY 546


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 7   EVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKS-LPKR 171
           E+K + +  +   K+++ E   + RKI+ +      +T +PP+ P     S +PK+
Sbjct: 70  ELKKLEEEGEEVEKILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVPKK 125


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 211 TSEAAMKKIEDNNTLSLLFTQVQTSTISRL 300
           T + + + +E  N   L F+Q+Q+ST+  L
Sbjct: 27  TLQLSSQDLESENAYDLKFSQIQSSTVYEL 56


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 269  VNNKDKVLLSSIFFIA 222
            ++NKDK+LL SIF ++
Sbjct: 1594 ISNKDKLLLQSIFLLS 1609


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 257 DKVLLSSIFFIAASDVRGNLM 195
           D +LLS  FF A  D  GNL+
Sbjct: 729 DDILLSYTFFEARYDTNGNLL 749


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 257 DKVLLSSIFFIAASDVRGNLM 195
           D +LLS  FF A  D  GNL+
Sbjct: 729 DDILLSYTFFEARYDTNGNLL 749


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 85  IRNSVHFRRPKTFEPPRHP 141
           IR  +H+ +PK+ E P  P
Sbjct: 43  IRKHIHYPKPKSIEAPMFP 61


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 124 EPPRHPKY 147
           EPPRHPKY
Sbjct: 358 EPPRHPKY 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,798
Number of Sequences: 5004
Number of extensions: 37031
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)