Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0406
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 98 3e-21
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 98 4e-21
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 0.53
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 30 0.92
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094... 28 4.9
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 27 8.6
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845... 27 8.6
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 27 8.6
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 98.3 bits (234), Expect = 3e-21
Identities = 46/77 (59%), Positives = 56/77 (72%)
Frame = +1
Query: 25 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 204
+ALKA + V G K +KIR SV F RPKT + R PKYPR S P RN++D Y I+K+
Sbjct: 26 QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85
Query: 205 PLTSEAAMKKIEDNNTL 255
PLT+E+AMKKIEDNNTL
Sbjct: 86 PLTTESAMKKIEDNNTL 102
Score = 97.9 bits (233), Expect = 4e-21
Identities = 48/61 (78%), Positives = 51/61 (83%)
Frame = +3
Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
LVFIV A+K IKAAVKK+YDI KVNTLIRPDGKKKAYV+L DYDALDVANKIGI
Sbjct: 102 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGI 161
Query: 432 I 434
I
Sbjct: 162 I 162
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 97.9 bits (233), Expect = 4e-21
Identities = 48/61 (78%), Positives = 51/61 (83%)
Frame = +3
Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
LVFIV A+K IKAAVKK+YDI KVNTLIRPDGKKKAYV+L DYDALDVANKIGI
Sbjct: 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGI 151
Query: 432 I 434
I
Sbjct: 152 I 152
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/77 (57%), Positives = 56/77 (72%)
Frame = +1
Query: 25 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 204
+ALK + V G ++ +KIR SV F RPKT + R PKYPR S P RN++D Y I+K+
Sbjct: 16 QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75
Query: 205 PLTSEAAMKKIEDNNTL 255
PLT+E+AMKKIEDNNTL
Sbjct: 76 PLTTESAMKKIEDNNTL 92
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 52 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 192
+KGE K++R+ NS +R KT +PP H K +K K D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 30.3 bits (65), Expect = 0.92
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 210 HV*SSNEED*R*QHLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 356
+V S + D L+ +H H IK +KK YD + +K +I+P
Sbjct: 286 NVDSESSSDSELDDLILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334
>07_03_0815 +
21707061-21707112,21707394-21708286,21709289-21709459,
21709880-21710143,21710404-21710421
Length = 465
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 SLCLREIAWMPTTSLNSLSRLKQQ*RRLK-ITTPCLYCS 268
+L L+ + WM +++ L RL RLK +T C +CS
Sbjct: 193 TLRLKHLNWMNLSAVRGLLRLNAVVPRLKFLTVSCCFCS 231
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 1 RHEVKPVTKALKAQRKVVKGEHGKRVRKIRNSV 99
RHEV+ +++A++ V++GE R + +S+
Sbjct: 736 RHEVRKISRAIQRAADVLRGEFSNRNESLYSSL 768
>03_03_0129 -
14684003-14684123,14684205-14684323,14684406-14684501,
14684605-14684712,14684974-14685060,14685135-14685338,
14685429-14685488,14686096-14686264,14686400-14686473,
14686586-14686897,14687054-14687212
Length = 502
Score = 27.1 bits (57), Expect = 8.6
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +1
Query: 145 YPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLSLLFTQVQTSTISRLQSRNSMI* 324
Y LPKR +I+ P +A + DNN +SL FT+ T+ R I
Sbjct: 227 YMETELPKRGI--TMTVIR-PADMDALQNAL-DNNNVSLFFTETPTNPFLRCID----ID 278
Query: 325 MLLKSTHSSGLMVRRKRTYDS 387
++ K HS G ++ T+ S
Sbjct: 279 LVSKMCHSKGALLCIDSTFAS 299
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 140 GCLGGSNVLGLRK 102
GC GGSN++G+RK
Sbjct: 766 GCAGGSNLIGIRK 778
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,976
Number of Sequences: 37544
Number of extensions: 226511
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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