Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0406
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 4e-21
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17) 98 4e-21
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2) 30 0.94
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8) 29 1.6
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 29 2.9
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 3.8
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 28 5.0
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6) 28 5.0
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 27 8.8
SB_14488| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 97.9 bits (233), Expect = 4e-21
Identities = 47/59 (79%), Positives = 52/59 (88%)
Frame = +3
Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIG 428
LVFIV ANK IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DYDALDV+NK+G
Sbjct: 214 LVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSNKVG 272
Score = 96.3 bits (229), Expect = 1e-20
Identities = 45/77 (58%), Positives = 56/77 (72%)
Frame = +1
Query: 25 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 204
KA KA++ V KG + +K+R SV F RPKT R+PKYPR S P+ N++D Y IIK
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKH 197
Query: 205 PLTSEAAMKKIEDNNTL 255
PLT+E+AMKKIEDNNTL
Sbjct: 198 PLTTESAMKKIEDNNTL 214
>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
Length = 71
Score = 97.9 bits (233), Expect = 4e-21
Identities = 47/59 (79%), Positives = 52/59 (88%)
Frame = +3
Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIG 428
LVFIV ANK IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DYDALDV+NK+G
Sbjct: 10 LVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSNKVG 68
>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
Length = 114
Score = 30.3 bits (65), Expect = 0.94
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 7 EVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDA 186
EV P T+ K R + K+ RK + R+PK + PR PK P+K ++N+
Sbjct: 48 EVLPATQYGK-WRPYESKKKPKKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGG 106
Query: 187 Y 189
+
Sbjct: 107 H 107
>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
Length = 149
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 100 HFRRPKTFEPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKI 237
H P+ F PP+H PRK P +N + N+ PL +A KKI
Sbjct: 66 HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKI 115
>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 599
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +1
Query: 46 KVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 186
K+VKGE K+ ++ H + K PK PRK S P+R DA
Sbjct: 537 KLVKGEKSKKQKRGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 137 CLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL*ALSALVTGFTSC 3
CL N C E R PC PFT+F+ +L+ VT +C
Sbjct: 20 CLNSQNTCRFETCYERDTGRAT-PCMPFTSFM-SLTRNVTTSNTC 62
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 182 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 99
SMR++ G F+G L C G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663
>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
Length = 154
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 135 PRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSL 34
PRR +R+ ++ + N P + +F +YNL + L
Sbjct: 49 PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 79 RKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 198
R+++ +FR P T+ P R+P + R + N+MD ++
Sbjct: 466 REMKLGANFRAPPTYGPFRNPGFQRAQM--ANQMDQNELV 503
>SB_14488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 43 RKVVKGEHGKRVRKIRNSVHFRRPKTFEP-PRHPKYPRKSLPKRNRMDAYNII 198
+K+ K E K + ++ S P+T+EP P PK PRKS+ + + NII
Sbjct: 7 KKLSKSELIKLILELEYSKPVPEPRTYEPRPPVPK-PRKSVKQMVQEYEENII 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,387
Number of Sequences: 59808
Number of extensions: 278435
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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