Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0406
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    95   3e-20
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    90   1e-18
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    29   2.5  
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       29   2.5  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       29   2.5  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    29   2.5  
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical...    27   5.8  
AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical ...    27   5.8  
U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain (pr...    27   7.7  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    27   7.7  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 43/77 (55%), Positives = 59/77 (76%)
 Frame = +1

Query: 25  KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 204
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 205 PLTSEAAMKKIEDNNTL 255
           PLT+E+AMKKIE++NTL
Sbjct: 71  PLTTESAMKKIEEHNTL 87



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 42/61 (68%), Positives = 47/61 (77%)
 Frame = +3

Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
           LVFIV   ANK+ IK AV KLY++   KVNTLI P  +KKAYVRL  DYDALDVANKIG+
Sbjct: 87  LVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGV 146

Query: 432 I 434
           I
Sbjct: 147 I 147


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 41/79 (51%), Positives = 58/79 (73%)
 Frame = +1

Query: 19  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 198
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 199 KFPLTSEAAMKKIEDNNTL 255
           K P T+E++MKKIED+NTL
Sbjct: 68  KAPHTTESSMKKIEDHNTL 86



 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 44/61 (72%), Positives = 47/61 (77%)
 Frame = +3

Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
           LVFIV   ANKHHIK AV  LY++   KVNTLI P  +KKAYVRLA DYDALDVANKIG 
Sbjct: 86  LVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIGF 145

Query: 432 I 434
           I
Sbjct: 146 I 146


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 97  VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 228
           + FRR  +    RH    R+++P ++      I KFP  SE A+
Sbjct: 1   MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 225
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 226 MKKIEDNNTL 255
           M  I++N  L
Sbjct: 491 MADIQNNEYL 500


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 225
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 226 MKKIEDNNTL 255
           M  I++N  L
Sbjct: 832 MADIQNNEYL 841


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 225
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 226 MKKIEDNNTL 255
           M  I++N  L
Sbjct: 491 MADIQNNEYL 500


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 225
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 226 MKKIEDNNTL 255
           M  I++N  L
Sbjct: 832 MADIQNNEYL 841


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 10  VKPVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 153
           + P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 109 IPPDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +1

Query: 13  KPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 192
           KP+ ++ K  ++ +  E  K V  + N       ++ EPP+ P   + SL K+  +   N
Sbjct: 50  KPILESNKKLQEEIIDEKHKIVETLNNFKPSPLQRSIEPPKTPSINKPSLIKKPSVILPN 109

Query: 193 IIKFPLTSEAAMKKIEDNNTLS 258
             +  + S   +  ++DN+  S
Sbjct: 110 PPQNLVVSNLIVSYLQDNSDKS 131


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 434 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 318
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 434 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 318
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 434 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 318
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 151 RKSLPKRNRMDAYNII-KFPLTSEAAMKKIEDNNTLSLLFTQ 273
           RKSLPK+NR  A NI  K P TS  A      N      F+Q
Sbjct: 5   RKSLPKKNR--ASNITEKMPTTSTEAQSSSSKNQDRCRSFSQ 44


>AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical
           protein Y105C5A.22 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 61  EHGKRVRKI-RNSVHFRRPK-TFEPPRHPKYPRKSLPKRNRMD 183
           E  K++RKI RN  H R+   T    + P Y R+S P+RN  D
Sbjct: 122 ERRKKMRKIGRNFSHDRQQSSTSLSAQPPVYRRRSEPRRNDCD 164


>AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical
           protein D1007.4 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 101 ISADPRRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLK 220
           ++ DP   +LL     + S  ++ I W+P+ S+ S+ +LK
Sbjct: 34  MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLK 73


>U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 11 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 1   RHEVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 117
           R+E + + K  KA+R+  + E  KR+RK+ +  + + P+
Sbjct: 251 RYERREMEKQNKAERERRRKEEAKRIRKLVDIAYAKDPR 289


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 223 AMKKIEDNNTLSLLFTQVQTSTISRLQSRNSMI 321
           +MKKI +    +L  ++V TST+   +SR S I
Sbjct: 280 SMKKISNRTESALYASRVDTSTLGGFRSRTSTI 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,596,134
Number of Sequences: 27780
Number of extensions: 210517
Number of successful extensions: 744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)