Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0406
(504 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 26 0.26
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 1.4
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 1.8
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 4.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 5.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 5.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 5.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.3
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 7.3
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 9.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 9.6
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 25.8 bits (54), Expect = 0.26
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 220 AAMKKIEDNNTLSLLFTQVQTSTISRLQSRNSM 318
A IE++N ++ FT++ +TI L + N+M
Sbjct: 562 AEPSNIEESNNMTDSFTRIANNTIQELYTLNNM 594
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.4 bits (48), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 261 IVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 356
I+ SA H K+LYD ++ N LIRP
Sbjct: 7 ILILSARICHGNPDAKRLYDDLLSNYNRLIRP 38
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRPDG 362
K+LYD ++ N LIRP G
Sbjct: 22 KRLYDDLLSNYNRLIRPVG 40
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N LIRP
Sbjct: 35 KRLYDDLLSNYNRLIRP 51
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N L+RP
Sbjct: 26 KRLYDDLLSNYNKLVRP 42
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 81 PYSLPMFTFYNLPLSLKCFSNRFHLVP 1
P ++ F+F LP++ F+N +VP
Sbjct: 582 PPTIQQFSFTKLPMNAGEFANLQCIVP 608
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 21.0 bits (42), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 294 KAAVKKLYDINVAKVNTLIRPDGKKKAY 377
KAAV +L + + K + P GKK +
Sbjct: 226 KAAVMRLGLMEIIKFVNIFFPGGKKTTF 253
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 20.6 bits (41), Expect = 9.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 407 QCVIISSESYVRFLLTIRPD 348
+CV + ESY +F +++ D
Sbjct: 170 KCVSDNGESYAKFTISVTID 189
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 152 GSLCLREIAWMP 187
GS C +IAW P
Sbjct: 108 GSTCKIDIAWFP 119
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 20.6 bits (41), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 328 LLKSTHSSGLMVRRKRTYD 384
LLK+ S +M+R R YD
Sbjct: 410 LLKACSSEVMMLRMARKYD 428
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,493
Number of Sequences: 438
Number of extensions: 2490
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -