Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0406
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    95   3e-20
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    94   6e-20
At1g10530.1 68414.m01186 expressed protein                             34   0.063
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    33   0.083
At1g13130.1 68414.m01522 glycosyl hydrolase family 5 protein / c...    28   4.1  
At1g05950.1 68414.m00624 expressed protein                             28   4.1  
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    27   7.2  
At5g11550.1 68418.m01347 expressed protein                             27   9.5  
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ...    27   9.5  
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic...    27   9.5  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
 Frame = +1

Query: 16  PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 192
           P  KALKA + V  G+  K+  +KIR  V F RPKT   PR PKYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQ 73

Query: 193 IIKFPLTSEAAMKKIEDNNTL 255
           I+K+PLT+E+AMKKIEDNNTL
Sbjct: 74  ILKYPLTTESAMKKIEDNNTL 94



 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 47/61 (77%), Positives = 49/61 (80%)
 Frame = +3

Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
           LVFIV   A+K  IK AVKK+YDI   KVNTLIRPDG KKAYVRL  DYDALDVANKIGI
Sbjct: 94  LVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

Query: 432 I 434
           I
Sbjct: 154 I 154


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 47/61 (77%), Positives = 49/61 (80%)
 Frame = +3

Query: 252 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 431
           LVFIV   A+K  IK AVKK+YDI   KVNTLIRPDG KKAYVRL  DYDALDVANKIGI
Sbjct: 94  LVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153

Query: 432 I 434
           I
Sbjct: 154 I 154



 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 45/81 (55%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
 Frame = +1

Query: 16  PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 192
           P  KALKA + V  G+   K+ +KIR  V F RPKT   PR  KYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQ 73

Query: 193 IIKFPLTSEAAMKKIEDNNTL 255
           I+K+PLT+E+AMKKIEDNNTL
Sbjct: 74  ILKYPLTTESAMKKIEDNNTL 94


>At1g10530.1 68414.m01186 expressed protein
          Length = 166

 Score = 33.9 bits (74), Expect = 0.063
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   RHEVKPVTKALK-AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEP 129
           +H+++  T A K + +KV + + GK+ R IRNS    + KT+ P
Sbjct: 113 KHQIEKTTTAKKFSDKKVPEKKQGKQFRVIRNSTSLLKSKTWRP 156


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 33.5 bits (73), Expect = 0.083
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +3

Query: 273 SANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 371
           SA+K  IK  ++ LY  +V KVNTL   DGKKK
Sbjct: 38  SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69


>At1g13130.1 68414.m01522 glycosyl hydrolase family 5 protein /
           cellulase family protein
          Length = 552

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 RMDAYNIIKFPLTSEAAMKKIEDNNTLSL 261
           R DAYN++  PLT    ++ ++D   L+L
Sbjct: 403 RTDAYNLVFHPLTGLCIVRSLDDPKMLTL 431


>At1g05950.1 68414.m00624 expressed protein
          Length = 590

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 294 KAAVKKLYDINVAKVNTLI-RPDGKKKAYVRLARDY 398
           KAA+K+ Y+I   KV  L+  P  + KA  RL   Y
Sbjct: 291 KAALKRRYEIKAKKVAALLSHPGARGKATTRLQNRY 326


>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 PKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIED 243
           PK FE P+ P++P+  LPK        + K P   +  + K+ +
Sbjct: 52  PK-FEVPKLPEFPKPELPKLPEFPKPELPKIPEIPKPELPKVPE 94



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 EPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKI 237
           E P+ P+ P+  LPK   +   ++ KFP  S+  + K+
Sbjct: 143 ELPKMPEIPKPELPKFPEIPKPDLPKFPENSKPEVPKL 180


>At5g11550.1 68418.m01347 expressed protein 
          Length = 314

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 112 PKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKI 237
           P T  PP HP  P   LP    + + + I +  LTS +   K+
Sbjct: 76  PSTAPPPPHPPPPPPPLPVTTTLQETFQIAELHLTSVSESDKL 118


>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 456

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 344 CVDFSNIYIIEFLDCSLDMVLVCT---CVNNKDKVLLSSI 234
           C+ F  +  IE  DC   M   CT   C +NK     S++
Sbjct: 320 CICFEQVCTIEVKDCGHQMCAQCTLALCCHNKPNPTTSTV 359


>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
           to heat shock protein 101 GI:6715468 GB:AAF26423 from
           [Arabidopsis thaliana]
          Length = 911

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 4   HEVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTF 123
           +EV   T  +K++ + ++G+ GK+V       +F+  KT+
Sbjct: 128 NEVGVATARVKSEVEKLRGKEGKKVESASGDTNFQALKTY 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,941,814
Number of Sequences: 28952
Number of extensions: 191713
Number of successful extensions: 582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)